Gene detail information of Glyur000034s00002959.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76110.1 | 3.00E-08 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| NR | KHN23232.1 | 5.27E-131 | High mobility group B protein 10 [Glycine soja] |
| Swissprot | tr|Q9LTT3|HMG10_ARATH | 1.00E-09 | High mobility group B protein 10 |
| trEMBL | tr|K7N2K2|K7N2K2_SOYBN | 2.00E-126 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G22865.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00034 | 351843 | 354243 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ARID |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000034s00002959.1 | PF01388.16 | ARID | 35 | 118 | 4.90E-12 |
| Glyur000034s00002959.1 | PF00505.14 | HMG_box | 226 | 289 | 1.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.139 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.230 |
| SRR9715740 | Leave | 0.208 |
| SRR9715741 | Leave | 0.022 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.041 |
| SRR8749031 | Uninduced | 0.085 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.011 |
| SRR8400027 | Control-Root | 0.046 |