Gene detail information of Glyur000034s00002965.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G23380.13.00E-60KNOTTED1-like homeobox gene 6
NRAFK44130.12.74E-149unknown [Lotus japonicus]
Swissprottr|Q9FP29|KNOS1_ORYSJ1.00E-89Homeobox protein knotted-1-like 1
trEMBLtr|I3SV38|I3SV38_LOTJA1.00E-149Uncharacterized protein {ECO:0000313|EMBL:AFK44130.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00034401835406872+


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002965.1PF03790.8KNOX1621041.60E-18
Glyur000034s00002965.1PF03791.8KNOX21101591.10E-23
Glyur000034s00002965.1PF03789.8ELK2122331.60E-09
Glyur000034s00002965.1PF05920.6Homeobox_KN2522911.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.663
SRR1783600control6.751
SRR1783602moderate drought stress11.301
SRR1811619moderate drought stress10.698

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.845
DRR006520Root Summer glycyrrhizin high producing strain14.577
DRR006521Root Winter glycyrrhizin high producing strain17.440
DRR006522Root Winter glycyrrhizin high producing strain17.244
DRR006523Root Summer glycyrrhizin low producing strain28.788
DRR006524Root Summer glycyrrhizin low producing strain29.199
DRR006525Leaf Summer glycyrrhizin high producing strain0.260
DRR006526Leaf Summer glycyrrhizin high producing strain0.239

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.671
SRR2868004Drought Stress(Tissue:root)11.417
SRR2967015Control (Tissue:root)17.190

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.385
SRR9715740Leave0.144
SRR9715741Leave0.459
SRR9715739Root6.775
SRR9715742Root12.047
SRR9715743Root13.593

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.084
SRR8749028MeJA induced 9h21.613
SRR8749029MeJA induced 9h22.550
SRR8749030Uninduced13.147
SRR8749031Uninduced7.039
SRR8749032Uninduced8.186

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.630
SRR8400027Control-Root10.904

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved