Gene detail information of Glyur000034s00002985.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05740.10RECQ helicase l1
NRXP_004495672.10PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cicer arietinum]
COGYP_007173256.17.00E-105ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Swissprottr|Q9FT74|RQL1_ARATH0ATP-dependent DNA helicase Q-like 1
trEMBLtr|G7I9G1|G7I9G1_MEDTR0RecQ family ATP-dependent DNA helicase {ECO:0000313|EMBL:AES61452.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00034480832485994-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10901BLM, RECQL3, SGS1 EC:3.6.4.12 Homologous recombination map03440
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006310  DNA recombination


molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002985.1PF00270.24DEAD2454143.40E-16
Glyur000034s00002985.1PF00271.26Helicase_C4865583.60E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.450
SRR1783600control1.456
SRR1783602moderate drought stress7.300
SRR1811619moderate drought stress7.461

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.121
DRR006520Root Summer glycyrrhizin high producing strain1.053
DRR006521Root Winter glycyrrhizin high producing strain0.333
DRR006522Root Winter glycyrrhizin high producing strain0.336
DRR006523Root Summer glycyrrhizin low producing strain0.735
DRR006524Root Summer glycyrrhizin low producing strain0.800
DRR006525Leaf Summer glycyrrhizin high producing strain0.187
DRR006526Leaf Summer glycyrrhizin high producing strain0.197

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.506
SRR2868004Drought Stress(Tissue:root)1.824
SRR2967015Control (Tissue:root)1.204

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.532
SRR9715740Leave7.427
SRR9715741Leave3.203
SRR9715739Root1.649
SRR9715742Root3.179
SRR9715743Root2.372

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.400
SRR8749028MeJA induced 9h1.551
SRR8749029MeJA induced 9h1.281
SRR8749030Uninduced0.158
SRR8749031Uninduced0.118
SRR8749032Uninduced0.122

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.797
SRR8400027Control-Root8.868

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved