Gene detail information of Glyur000034s00002994.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G05670.16.00E-04RING/U-box protein
NRKHN16082.10PHD and RING finger domain-containing protein 1 [Glycine soja]
Swissprottr|Q9SGH2|MBD9_ARATH1.00E-07Methyl-CpG-binding domain-containing protein 9
trEMBLtr|A0A072U472|A0A072U472_MEDTR5.00E-06Poxvirus Ag35 surface protein {ECO:0000313|EMBL:KEH24497.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00034520244525541-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000034s00002994.3PF13639.1zf-RING_24745172.20E-07
Glyur000034s00002994.3PF00628.24PHD5676136.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.851
SRR1783600control18.147
SRR1783602moderate drought stress25.542
SRR1811619moderate drought stress25.211

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.092
DRR006520Root Summer glycyrrhizin high producing strain21.443
DRR006521Root Winter glycyrrhizin high producing strain33.009
DRR006522Root Winter glycyrrhizin high producing strain31.970
DRR006523Root Summer glycyrrhizin low producing strain25.815
DRR006524Root Summer glycyrrhizin low producing strain25.928
DRR006525Leaf Summer glycyrrhizin high producing strain15.311
DRR006526Leaf Summer glycyrrhizin high producing strain15.102

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.595
SRR2868004Drought Stress(Tissue:root)25.602
SRR2967015Control (Tissue:root)25.832

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.508
SRR9715740Leave14.427
SRR9715741Leave14.131
SRR9715739Root2.447
SRR9715742Root13.265
SRR9715743Root9.581

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h19.922
SRR8749028MeJA induced 9h32.007
SRR8749029MeJA induced 9h19.076
SRR8749030Uninduced23.389
SRR8749031Uninduced30.664
SRR8749032Uninduced23.870

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.705
SRR8400027Control-Root21.944

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved