Gene detail information of Glyur000035s00004995.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G22330.14.00E-126Alkaline phytoceramidase (aPHC)
NRXP_004486209.14.09E-174PREDICTED: alkaline ceramidase 3-like isoform X1 [Cicer arietinum]
trEMBLtr|Q2HVG4|Q2HVG4_MEDTR3.00E-174Alkaline phytoceramidase {ECO:0000313|EMBL:ABD28483.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00035299582302948+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04711ACER3, YDC1 EC:3.5.1.- Sphingolipid metabolism map00600


Gene Ontology

biological_process

GO:0006672  ceramide metabolic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0016811  hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000035s00004995.1PF05875.7Ceramidase883291.30E-61


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.622
SRR1783600control11.821
SRR1783602moderate drought stress10.412
SRR1811619moderate drought stress10.103

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.423
DRR006520Root Summer glycyrrhizin high producing strain15.637
DRR006521Root Winter glycyrrhizin high producing strain32.588
DRR006522Root Winter glycyrrhizin high producing strain32.628
DRR006523Root Summer glycyrrhizin low producing strain15.192
DRR006524Root Summer glycyrrhizin low producing strain14.916
DRR006525Leaf Summer glycyrrhizin high producing strain8.353
DRR006526Leaf Summer glycyrrhizin high producing strain8.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.680
SRR2868004Drought Stress(Tissue:root)21.415
SRR2967015Control (Tissue:root)18.879

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave22.551
SRR9715740Leave19.869
SRR9715741Leave21.826
SRR9715739Root9.575
SRR9715742Root16.683
SRR9715743Root14.487

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h35.244
SRR8749028MeJA induced 9h20.885
SRR8749029MeJA induced 9h27.839
SRR8749030Uninduced25.394
SRR8749031Uninduced15.900
SRR8749032Uninduced18.410

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root21.485
SRR8400027Control-Root22.381

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved