Gene detail information of Glyur000035s00004999.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G12050.18.00E-165fumarylacetoacetase, putative
NRAFK42453.10unknown [Lotus japonicus]
COGYP_003572453.11.00E-141Fumarylacetoacetate (FAA) hydrolase [Salinibacter ruber M8]
trEMBLtr|I3SQB1|I3SQB1_LOTJA0Uncharacterized protein {ECO:0000313|EMBL:AFK42453.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00035327460332193+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01555FAH, fahA EC:3.7.1.2 Tyrosine metabolism map00350
Styrene degradationmap00643


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009072  aromatic amino acid family metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004334  fumarylacetoacetase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000035s00004999.1PF09298.6FAA_hydrolase_N691732.40E-34
Glyur000035s00004999.1PF01557.13FAA_hydrolase1794242.90E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control75.988
SRR1783600control76.435
SRR1783602moderate drought stress63.033
SRR1811619moderate drought stress62.654

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain62.480
DRR006520Root Summer glycyrrhizin high producing strain61.994
DRR006521Root Winter glycyrrhizin high producing strain34.809
DRR006522Root Winter glycyrrhizin high producing strain33.650
DRR006523Root Summer glycyrrhizin low producing strain76.758
DRR006524Root Summer glycyrrhizin low producing strain76.889
DRR006525Leaf Summer glycyrrhizin high producing strain48.214
DRR006526Leaf Summer glycyrrhizin high producing strain48.048

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)102.468
SRR2868004Drought Stress(Tissue:root)89.181
SRR2967015Control (Tissue:root)83.449

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave47.423
SRR9715740Leave57.366
SRR9715741Leave53.944
SRR9715739Root83.765
SRR9715742Root85.007
SRR9715743Root80.295

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h135.191
SRR8749028MeJA induced 9h135.882
SRR8749029MeJA induced 9h119.470
SRR8749030Uninduced114.878
SRR8749031Uninduced49.397
SRR8749032Uninduced74.500

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.367
SRR8400027Control-Root67.006

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved