Gene detail information of Glyur000035s00005007.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12560.2 | 2.00E-62 | F-box and associated interaction domains-containing protein |
| NR | XP_004486223.1 | 0 | PREDICTED: F-box protein CPR30-like [Cicer arietinum] |
| Swissprot | tr|Q9SU30|CPR30_ARATH | 6.00E-77 | F-box protein CPR30 |
| trEMBL | tr|I1MFN9|I1MFN9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G12190.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 372883 | 375390 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005007.1 | PF00646.28 | F-box | 2 | 40 | 9.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 61.047 |
| SRR1783600 | control | 61.234 |
| SRR1783602 | moderate drought stress | 70.432 |
| SRR1811619 | moderate drought stress | 68.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 51.910 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.609 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 62.415 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 60.025 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 68.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.082 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.791 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.630 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 50.273 |
| SRR2868004 | Drought Stress(Tissue:root) | 71.386 |
| SRR2967015 | Control (Tissue:root) | 78.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 96.442 |
| SRR9715740 | Leave | 77.519 |
| SRR9715741 | Leave | 96.099 |
| SRR9715739 | Root | 67.598 |
| SRR9715742 | Root | 75.413 |
| SRR9715743 | Root | 73.969 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.915 |
| SRR8749028 | MeJA induced 9h | 67.370 |
| SRR8749029 | MeJA induced 9h | 56.131 |
| SRR8749030 | Uninduced | 55.863 |
| SRR8749031 | Uninduced | 59.078 |
| SRR8749032 | Uninduced | 55.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 52.812 |
| SRR8400027 | Control-Root | 55.178 |