Gene detail information of Glyur000035s00005012.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G02870.1 | 7.00E-114 | Inositol monophosphatase family protein |
| NR | CAX94844.1 | 0 | inositol monophosphatase [Phaseolus vulgaris] |
| COG | YP_006719661.1 | 3.00E-60 | histidinol-phosphate phosphatase [Geobacter metallireducens GS-15] |
| Swissprot | tr|Q9M8S8|VTC4_ARATH | 2.00E-154 | Inositol-phosphate phosphatase |
| trEMBL | tr|C1LZ50|C1LZ50_PHAVU | 0 | Inositol monophosphatase {ECO:0000313|EMBL:CAX94844.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 405523 | 410127 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10047 | VTC4 | EC:3.1.3.25 3.1.3.93 | Ascorbate and aldarate metabolism | map00053 |
| Inositol phosphate metabolism | map00562 | |||
| Phosphatidylinositol signaling system | map04070 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005012.1 | PF00459.20 | Inositol_P | 9 | 269 | 2.80E-76 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.693 |
| SRR1783600 | control | 6.632 |
| SRR1783602 | moderate drought stress | 5.673 |
| SRR1811619 | moderate drought stress | 5.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.954 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.284 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.948 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.570 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.488 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.461 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 35.063 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.998 |
| SRR2967015 | Control (Tissue:root) | 15.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.025 |
| SRR9715740 | Leave | 4.237 |
| SRR9715741 | Leave | 5.731 |
| SRR9715739 | Root | 3.498 |
| SRR9715742 | Root | 4.219 |
| SRR9715743 | Root | 3.726 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.543 |
| SRR8749028 | MeJA induced 9h | 5.344 |
| SRR8749029 | MeJA induced 9h | 12.387 |
| SRR8749030 | Uninduced | 0.226 |
| SRR8749031 | Uninduced | 0.519 |
| SRR8749032 | Uninduced | 1.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.495 |
| SRR8400027 | Control-Root | 30.093 |