Gene detail

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Gene detail information of Glyur000036s00004633.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G33910.1	8.00E-72	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003608463.1	2.07E-131	Prolyl 4-hydroxylase subunit alpha-1 [Medicago truncatula]
COG	YP_007098767.1	1.00E-33	ATP-dependent chaperone ClpB [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q8VZJ7\|P4H9_ARATH	2.00E-92	Probable prolyl 4-hydroxylase 9 (Precursor)
trEMBL	tr\|G7JCT5\|G7JCT5_MEDTR	8.00E-132	Prolyl 4-hydroxylase alpha-like protein {ECO:0000313\|EMBL:AES90660.1}

Sequence

Transcript Sequence

>Glyur000036s00004633.1
ATGGCATGGGAGGGCATTCTTGGTGCTGTTGATTATGCGCGAGCTAATAAACAACAAATTGTGGAATCTGAGCATTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGGATATTTACTAAGGCAGGATTGGACAACACGTCTGTTCTGCAGGCTACTGATAACTTTATGGCCCAGCAACCTAAGGTTACGGGTGAAATTTCTAGTCCTTTAATGGGTTCACATCTTAGCACCCTCTTGGACAATTCTCGAAAGCACAAGAAAGAAATGGGTGATGAATGTGTATCTGTGGAGCACCTTTTGCTAGCATTTCATTCAGATAAGAGGTTTGGGCAACAATCATTTAAGAATCTTCAGCTTAGCGAGAGGACTTTGAAGGATGCCATACAGGCTATTCGTGGAAGTCAAAGAGAAACCGATCAAGGAAATTGGAGCTTGAGGACGAACAAGCTCGGCTTCCTTTACATATTCCTCATATGCATCTTCTTCTTCCTTGCTGGATTCTTCGGTTCTGCTCTCTTCTCTCACTCTCAGGAAGATGGACATGGCCTGAGCCCTAGACCAAGGCTGCTTGAATCAGTGAAGGAGGCGAAGTACAATTTGATGTCTGCAGGAGAGTCTGATGATGATTCAATTACATCGATTCCTTTTCAGGTTTTGAGCTGGAAGCCTCGAGCTCTGTATTTTCCCAATTTTGCAACTGCTGAACAATGTGAAAGCATAGTTGGTATGGCTAAGGCAGGTGGCCTCAAACCATCACGTTTGGGGGTTCCCAAGGGAGAAACTGAGGAGAATTACAAGGGATATAGAACAAGCTATGGTGTGTTTATTAGTGCTTCTGAGGATAAAACAGGGATTTTAGATGTCATTGAGGAGAAAATTGCAAGAGCAACTATGATTCCTAGGAGTCATGGAGAGGCATTTAATATCCTTCGCTATGAGGTTGGTCAAAGATTTAGTCCTCATTATGATACGATAGATCCTGCTGAATATGGACCACAGAAGAGCCAAAGGAATGGAGACTGCATTGGTTTAAAAGTAAGGCCACGACAGGGGGATGGACTCCTATTTTATTCATTGCTCCCCAACGGTACAATTGATCCGACATCACTCCATGAGGGCTGCCCTGTGATAGAAGGGGAGAAGTGGGTGGCTACGAAGAATACCATGTTTCAGGCATTTAATATCATTCGATATGAGGTTGGTCAAAGATATCGCCCTCATTATGATGCTGCAGATCCTGCTGTACATGGCCCACAAAAGAGCCAAAGGGTGGCTTCATTTTTGCTGTATTTAACTGATGTCGAGGAAGGTGGCGAGACTAATTTTCCATGTGAGAATGGCTTGAACTTGGAAGATAGCTATGCATACATAGACTGCATTGGTTTAAAAGTAAGGCCACGACAGGGGGATGGACTCCTATTCTATTCATTGCTCCCCAACGGTACATTTGATCAGACATCACTCCATGAGAGCTGCCCTGTGATAAAAGGGGAGAAGTGGGTGGCTACGAAGACGAAATCCAGAGGGATGAAGCCAATGGCACCAACCACACCATTGATGTCTCCAAAAAATGGCAACATGGCTGCCAAAAACCCACAGAACATCATGCCAATTGCAAAGAGCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	202064	213941	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00472	P4HA	EC:1.14.11.2	Arginine and proline metabolism	map00330

Gene Ontology

biological_process

GO:0019538 protein metabolic process

GO:0055114 oxidation-reduction process

molecular_function GO:0005506 iron ion binding GO:0016491 oxidoreductase activity GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors GO:0031418 L-ascorbic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004633.1	PF02861.15	Clp_N	9	60	6.70E-14
Glyur000036s00004633.1	PF02861.15	Clp_N	88	137	1.10E-08
Glyur000036s00004633.1	PF13640.1	2OG-FeII_Oxy_3	398	507	4.50E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.464
SRR1783600	control	1.502
SRR1783602	moderate drought stress	0.892
SRR1811619	moderate drought stress	1.043

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.659
DRR006520	Root Summer glycyrrhizin high producing strain	5.850
DRR006521	Root Winter glycyrrhizin high producing strain	4.709
DRR006522	Root Winter glycyrrhizin high producing strain	4.133
DRR006523	Root Summer glycyrrhizin low producing strain	1.872
DRR006524	Root Summer glycyrrhizin low producing strain	1.774
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.768
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.882

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.077
SRR2868004	Drought Stress(Tissue:root)	2.106
SRR2967015	Control (Tissue:root)	2.421

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.631
SRR9715740	Leave	0.844
SRR9715741	Leave	0.886
SRR9715739	Root	0.440
SRR9715742	Root	2.328
SRR9715743	Root	0.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.831
SRR8749028	MeJA induced 9h	3.717
SRR8749029	MeJA induced 9h	4.884
SRR8749030	Uninduced	1.165
SRR8749031	Uninduced	0.740
SRR8749032	Uninduced	1.796

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.884
SRR8400027	Control-Root	4.614