Gene detail information of Glyur000036s00004645.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23850.10AMP-dependent synthetase and ligase family protein
NRXP_003524440.10PREDICTED: long chain acyl-CoA synthetase 4-like [Glycine max]
COGYP_005846047.17.00E-82Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
Swissprottr|Q9T0A0|LACS4_ARATH0Long chain acyl-CoA synthetase 4
trEMBLtr|I1K699|I1K699_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36910.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036274347281999-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004645.1PF00501.23AMP-binding735423.90E-92


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.325
SRR1783600control1.326
SRR1783602moderate drought stress0.266
SRR1811619moderate drought stress0.258

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.339
DRR006520Root Summer glycyrrhizin high producing strain0.373
DRR006521Root Winter glycyrrhizin high producing strain0.863
DRR006522Root Winter glycyrrhizin high producing strain0.831
DRR006523Root Summer glycyrrhizin low producing strain0.235
DRR006524Root Summer glycyrrhizin low producing strain0.177
DRR006525Leaf Summer glycyrrhizin high producing strain2.149
DRR006526Leaf Summer glycyrrhizin high producing strain2.165

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.559
SRR2868004Drought Stress(Tissue:root)0.373
SRR2967015Control (Tissue:root)0.502

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.208
SRR9715740Leave1.574
SRR9715741Leave1.147
SRR9715739Root0.027
SRR9715742Root0.423
SRR9715743Root0.143

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.319
SRR8749028MeJA induced 9h0.411
SRR8749029MeJA induced 9h0.427
SRR8749030Uninduced0.149
SRR8749031Uninduced0.426
SRR8749032Uninduced0.252

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.989
SRR8400027Control-Root1.539

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved