Gene detail information of Glyur000036s00004647.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G23900.13.00E-72Nucleoside diphosphate kinase family protein
NRXP_006476377.17.85E-109PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
COGYP_001518040.11.00E-44nucleoside diphosphate kinase [Acaryochloris marina MBIC11017]
Swissprottr|Q8LAH8|NDK4_ARATH4.00E-109Nucleoside diphosphate kinase IV, chloroplastic/mitochondrial (Precursor)
trEMBLtr|V4TLN6|V4TLN6_9ROSI5.00E-109Nucleoside diphosphate kinase {ECO:0000256|RuleBase:RU004013}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036284881287811-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00940ndk, NME EC:2.7.4.6 Purine metabolism map00230
Pyrimidine metabolismmap00240
MAPK signaling pathway - plantmap04016


Gene Ontology

biological_process

GO:0006165  nucleoside diphosphate phosphorylation

GO:0006183  GTP biosynthetic process

GO:0006228  UTP biosynthetic process

GO:0006241  CTP biosynthetic process


molecular_function

GO:0004550  nucleoside diphosphate kinase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004647.1PF00334.14NDK881894.00E-39


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.953
SRR1783600control4.190
SRR1783602moderate drought stress6.053
SRR1811619moderate drought stress6.121

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.744
DRR006520Root Summer glycyrrhizin high producing strain12.847
DRR006521Root Winter glycyrrhizin high producing strain26.546
DRR006522Root Winter glycyrrhizin high producing strain25.949
DRR006523Root Summer glycyrrhizin low producing strain13.262
DRR006524Root Summer glycyrrhizin low producing strain13.224
DRR006525Leaf Summer glycyrrhizin high producing strain73.409
DRR006526Leaf Summer glycyrrhizin high producing strain73.559

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)64.383
SRR2868004Drought Stress(Tissue:root)37.625
SRR2967015Control (Tissue:root)33.700

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave116.294
SRR9715740Leave87.939
SRR9715741Leave78.021
SRR9715739Root5.122
SRR9715742Root8.644
SRR9715743Root7.393

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.063
SRR8749028MeJA induced 9h14.047
SRR8749029MeJA induced 9h11.988
SRR8749030Uninduced21.897
SRR8749031Uninduced12.609
SRR8749032Uninduced19.491

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.666
SRR8400027Control-Root22.980

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved