Gene detail information of Glyur000036s00004651.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G53110.1 | 8.00E-60 | RING/U-box superfamily protein |
| NR | XP_004503620.1 | 0 | PREDICTED: RING-H2 finger protein ATL22-like [Cicer arietinum] |
| Swissprot | tr|P0CH01|AT21A_ARATH | 6.00E-59 | Putative RING-H2 finger protein ATL21A (Precursor) |
| trEMBL | tr|A0A072TUM6|A0A072TUM6_MEDTR | 3.00E-167 | RING-H2 finger ATL21A-like protein {ECO:0000313|EMBL:KEH21229.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 314408 | 319139 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004651.1 | PF13947.1 | GUB_WAK_bind | 54 | 156 | 6.50E-09 |
| Glyur000036s00004651.1 | PF13639.1 | zf-RING_2 | 363 | 406 | 3.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.975 |
| SRR1783600 | control | 1.024 |
| SRR1783602 | moderate drought stress | 1.782 |
| SRR1811619 | moderate drought stress | 1.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.909 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.805 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.898 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.102 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.898 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.409 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 33.858 |
| SRR2868004 | Drought Stress(Tissue:root) | 48.002 |
| SRR2967015 | Control (Tissue:root) | 41.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.756 |
| SRR9715740 | Leave | 4.195 |
| SRR9715741 | Leave | 8.870 |
| SRR9715739 | Root | 2.756 |
| SRR9715742 | Root | 4.257 |
| SRR9715743 | Root | 4.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.963 |
| SRR8749028 | MeJA induced 9h | 5.755 |
| SRR8749029 | MeJA induced 9h | 1.887 |
| SRR8749030 | Uninduced | 12.985 |
| SRR8749031 | Uninduced | 16.369 |
| SRR8749032 | Uninduced | 10.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.591 |
| SRR8400027 | Control-Root | 4.353 |