Gene detail information of Glyur000036s00004652.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53110.15.00E-62RING/U-box superfamily protein
NRXP_007160165.16.63E-174hypothetical protein PHAVU_002G298300g [Phaseolus vulgaris]
Swissprottr|P0CH01|AT21A_ARATH1.00E-51Putative RING-H2 finger protein ATL21A (Precursor)
trEMBLtr|V7CPY2|V7CPY2_PHAVU2.00E-174Uncharacterized protein {ECO:0000313|EMBL:ESW32159.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036319868323154+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0030247  polysaccharide binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004652.1PF13947.1GUB_WAK_bind271012.60E-11
Glyur000036s00004652.1PF13639.1zf-RING_23493928.20E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.523
SRR1783600control13.300
SRR1783602moderate drought stress16.166
SRR1811619moderate drought stress16.025

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.577
DRR006520Root Summer glycyrrhizin high producing strain20.279
DRR006521Root Winter glycyrrhizin high producing strain7.883
DRR006522Root Winter glycyrrhizin high producing strain7.377
DRR006523Root Summer glycyrrhizin low producing strain29.451
DRR006524Root Summer glycyrrhizin low producing strain29.975
DRR006525Leaf Summer glycyrrhizin high producing strain5.476
DRR006526Leaf Summer glycyrrhizin high producing strain5.412

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)16.600
SRR2868004Drought Stress(Tissue:root)32.893
SRR2967015Control (Tissue:root)22.533

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave34.967
SRR9715740Leave42.745
SRR9715741Leave60.141
SRR9715739Root12.167
SRR9715742Root17.688
SRR9715743Root18.197

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.019
SRR8749028MeJA induced 9h16.245
SRR8749029MeJA induced 9h12.870
SRR8749030Uninduced32.860
SRR8749031Uninduced31.219
SRR8749032Uninduced21.517

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.540
SRR8400027Control-Root8.748

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved