Gene detail information of Glyur000036s00004663.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G10940.12.00E-64RING/U-box protein
NRXP_004503607.10PREDICTED: uncharacterized protein At4g10930-like [Cicer arietinum]
Swissprottr|Q8L7I1|Y4193_ARATH0Uncharacterized protein At4g10930
trEMBLtr|K7KRW1|K7KRW1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G36785.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036375550385857+


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004663.1PF00097.20zf-C3HC433710.00013
Glyur000036s00004663.1PF00628.24PHD1451831.20E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.258
SRR1783600control8.354
SRR1783602moderate drought stress9.785
SRR1811619moderate drought stress9.743

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.385
DRR006520Root Summer glycyrrhizin high producing strain11.080
DRR006521Root Winter glycyrrhizin high producing strain9.990
DRR006522Root Winter glycyrrhizin high producing strain9.779
DRR006523Root Summer glycyrrhizin low producing strain12.459
DRR006524Root Summer glycyrrhizin low producing strain12.459
DRR006525Leaf Summer glycyrrhizin high producing strain5.761
DRR006526Leaf Summer glycyrrhizin high producing strain5.775

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.597
SRR2868004Drought Stress(Tissue:root)11.493
SRR2967015Control (Tissue:root)11.664

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.337
SRR9715740Leave8.638
SRR9715741Leave7.669
SRR9715739Root0.627
SRR9715742Root5.540
SRR9715743Root5.398

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.641
SRR8749028MeJA induced 9h17.777
SRR8749029MeJA induced 9h8.930
SRR8749030Uninduced14.671
SRR8749031Uninduced18.509
SRR8749032Uninduced11.067

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.526
SRR8400027Control-Root9.969

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved