Gene detail information of Glyur000036s00004676.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G46290.103-ketoacyl-acyl carrier protein synthase I
NRXP_007160188.10hypothetical protein PHAVU_002G300400g [Phaseolus vulgaris]
COGYP_008237.13.00E-1703-oxoacyl-ACP synthase [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|P52410|KASC1_ARATH03-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBLtr|V7CPS0|V7CPS0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW32182.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036435680439221+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09458fabF EC:2.3.1.179 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Biotin metabolismmap00780


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004676.1PF00109.21ketoacyl-synt1312832.70E-35
Glyur000036s00004676.1PF02801.17Ketoacyl-synt_C2934001.50E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control20.443
SRR1783600control20.603
SRR1783602moderate drought stress14.632
SRR1811619moderate drought stress15.070

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.683
DRR006520Root Summer glycyrrhizin high producing strain0.662
DRR006521Root Winter glycyrrhizin high producing strain0.161
DRR006522Root Winter glycyrrhizin high producing strain0.137
DRR006523Root Summer glycyrrhizin low producing strain0.000
DRR006524Root Summer glycyrrhizin low producing strain0.077
DRR006525Leaf Summer glycyrrhizin high producing strain12.911
DRR006526Leaf Summer glycyrrhizin high producing strain13.136

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)70.340
SRR2868004Drought Stress(Tissue:root)30.292
SRR2967015Control (Tissue:root)21.418

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave10.059
SRR9715740Leave6.202
SRR9715741Leave6.067
SRR9715739Root15.270
SRR9715742Root8.858
SRR9715743Root8.424

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.020
SRR8749028MeJA induced 9h3.203
SRR8749029MeJA induced 9h2.494
SRR8749030Uninduced1.753
SRR8749031Uninduced1.665
SRR8749032Uninduced1.266

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root123.352
SRR8400027Control-Root115.789

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved