Gene detail information of Glyur000036s00004676.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G46290.1 | 0 | 3-ketoacyl-acyl carrier protein synthase I |
NR | XP_007160188.1 | 0 | hypothetical protein PHAVU_002G300400g [Phaseolus vulgaris] |
COG | YP_008237.1 | 3.00E-170 | 3-oxoacyl-ACP synthase [Candidatus Protochlamydia amoebophila UWE25] |
Swissprot | tr|P52410|KASC1_ARATH | 0 | 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor) |
trEMBL | tr|V7CPS0|V7CPS0_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32182.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00036 | 435680 | 439221 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K09458 | fabF | EC:2.3.1.179 | Fatty acid metabolism | map01212 |
Fatty acid biosynthesis | map00061 | |||
Biotin metabolism | map00780 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000036s00004676.1 | PF00109.21 | ketoacyl-synt | 131 | 283 | 2.70E-35 |
Glyur000036s00004676.1 | PF02801.17 | Ketoacyl-synt_C | 293 | 400 | 1.50E-26 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 20.443 |
SRR1783600 | control | 20.603 |
SRR1783602 | moderate drought stress | 14.632 |
SRR1811619 | moderate drought stress | 15.070 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.683 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.662 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.161 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.137 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.077 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.911 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.136 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 70.340 |
SRR2868004 | Drought Stress(Tissue:root) | 30.292 |
SRR2967015 | Control (Tissue:root) | 21.418 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 10.059 |
SRR9715740 | Leave | 6.202 |
SRR9715741 | Leave | 6.067 |
SRR9715739 | Root | 15.270 |
SRR9715742 | Root | 8.858 |
SRR9715743 | Root | 8.424 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 3.020 |
SRR8749028 | MeJA induced 9h | 3.203 |
SRR8749029 | MeJA induced 9h | 2.494 |
SRR8749030 | Uninduced | 1.753 |
SRR8749031 | Uninduced | 1.665 |
SRR8749032 | Uninduced | 1.266 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 123.352 |
SRR8400027 | Control-Root | 115.789 |