Gene detail information of Glyur000036s00004677.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G64510.11.00E-61Translation elongation factor EF1B/ribosomal protein S6 family protein
NRAFK44002.13.28E-112unknown [Lotus japonicus]
COGYP_007158093.11.00E-1130S ribosomal protein S6 [Anabaena cylindrica PCC 7122]
Swissprottr|Q8VY91|RR6_ARATH3.00E-8930S ribosomal protein S6 alpha, chloroplastic (Precursor)
trEMBLtr|I3SUR0|I3SUR0_LOTJA1.00E-112Uncharacterized protein {ECO:0000313|EMBL:AFK44002.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036439601444685-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006412  translation


cellular_component

GO:0005840  ribosome


molecular_function

GO:0003735  structural constituent of ribosome

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0019843  rRNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004677.1PF01250.12Ribosomal_S61092082.40E-21
Glyur000036s00004677.1PF13639.1zf-RING_23363799.10E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.414
SRR1783600control25.418
SRR1783602moderate drought stress26.375
SRR1811619moderate drought stress26.399

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain22.439
DRR006520Root Summer glycyrrhizin high producing strain22.494
DRR006521Root Winter glycyrrhizin high producing strain11.048
DRR006522Root Winter glycyrrhizin high producing strain11.360
DRR006523Root Summer glycyrrhizin low producing strain18.868
DRR006524Root Summer glycyrrhizin low producing strain18.614
DRR006525Leaf Summer glycyrrhizin high producing strain124.737
DRR006526Leaf Summer glycyrrhizin high producing strain124.019

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.088
SRR2868004Drought Stress(Tissue:root)10.547
SRR2967015Control (Tissue:root)14.699

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave53.311
SRR9715740Leave78.464
SRR9715741Leave50.014
SRR9715739Root9.048
SRR9715742Root9.186
SRR9715743Root9.654

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.456
SRR8749028MeJA induced 9h8.745
SRR8749029MeJA induced 9h11.728
SRR8749030Uninduced7.350
SRR8749031Uninduced4.884
SRR8749032Uninduced5.604

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.810
SRR8400027Control-Root22.230

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved