Gene detail information of Glyur000036s00004690.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23920.11.00E-116beta-amylase 1
NRXP_003532447.10PREDICTED: beta-amylase 1, chloroplastic-like isoform X1 [Glycine max]
COGYP_004639880.12.00E-27beta/alpha-amylase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q9LIR6|BAM1_ARATH7.00E-145Beta-amylase 1, chloroplastic (Precursor)
trEMBLtr|K7L4L5|K7L4L5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G02920.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00036501808505633-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01177E3.2.1.2 EC:3.2.1.2 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000036s00004690.1PF01373.12Glyco_hydro_14905072.40E-84


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.727
SRR1783600control16.652
SRR1783602moderate drought stress14.346
SRR1811619moderate drought stress14.489

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.651
DRR006520Root Summer glycyrrhizin high producing strain15.367
DRR006521Root Winter glycyrrhizin high producing strain9.784
DRR006522Root Winter glycyrrhizin high producing strain9.472
DRR006523Root Summer glycyrrhizin low producing strain24.057
DRR006524Root Summer glycyrrhizin low producing strain23.445
DRR006525Leaf Summer glycyrrhizin high producing strain14.522
DRR006526Leaf Summer glycyrrhizin high producing strain14.456

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)15.949
SRR2868004Drought Stress(Tissue:root)18.676
SRR2967015Control (Tissue:root)19.043

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.099
SRR9715740Leave19.733
SRR9715741Leave16.902
SRR9715739Root11.740
SRR9715742Root17.975
SRR9715743Root16.137

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.232
SRR8749028MeJA induced 9h10.864
SRR8749029MeJA induced 9h11.363
SRR8749030Uninduced10.876
SRR8749031Uninduced3.956
SRR8749032Uninduced2.960

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.992
SRR8400027Control-Root17.767

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved