Gene detail information of Glyur000037s00002596.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G19170.10nine-cis-epoxycarotenoid dioxygenase 4
NRAES95419.20carotenoid cleavage dioxygenase 4a-6 [Medicago truncatula]
COGNP_485149.12.00E-84hypothetical protein all1106 [Nostoc sp. PCC 7120]
Swissprottr|O49675|CCD4_ARATH0Probable carotenoid cleavage dioxygenase 4, chloroplastic (Precursor)
trEMBLtr|G7K3Y7|G7K3Y7_MEDTR0Carotenoid cleavage dioxygenase 4a-6 {ECO:0000313|EMBL:AES95419.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000374049442251-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09840NCED EC:1.13.11.51 Carotenoid biosynthesis map00906


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000037s00002596.1PF03055.10RPE651105751.30E-128


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.963
SRR1783600control6.196
SRR1783602moderate drought stress5.541
SRR1811619moderate drought stress5.202

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.157
DRR006520Root Summer glycyrrhizin high producing strain12.810
DRR006521Root Winter glycyrrhizin high producing strain0.381
DRR006522Root Winter glycyrrhizin high producing strain0.619
DRR006523Root Summer glycyrrhizin low producing strain5.244
DRR006524Root Summer glycyrrhizin low producing strain4.661
DRR006525Leaf Summer glycyrrhizin high producing strain685.393
DRR006526Leaf Summer glycyrrhizin high producing strain682.105

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.560
SRR2868004Drought Stress(Tissue:root)5.140
SRR2967015Control (Tissue:root)5.274

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave274.941
SRR9715740Leave544.657
SRR9715741Leave144.619
SRR9715739Root14.193
SRR9715742Root5.399
SRR9715743Root7.350

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.018
SRR8749028MeJA induced 9h0.190
SRR8749029MeJA induced 9h0.225
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.229

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.947
SRR8400027Control-Root12.854

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved