Gene detail information of Glyur000037s00002618.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76490.10hydroxy methylglutaryl CoA reductase 1
NRXP_004512291.10PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [Cicer arietinum]
COGNP_126055.12.00E-1153-hydroxy-3-methylglutaryl-coenzyme A reductase [Pyrococcus abyssi GE5]
Swissprottr|P29057|HMDH1_HEVBR03-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBLtr|A0A075EC73|A0A075EC73_ASTME03-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256|RuleBase:RU361219}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00037146544149947-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00021HMGCR EC:1.1.1.34 Terpenoid backbone biosynthesis map00900
AMPK signaling pathwaymap04152
Bile secretionmap04976


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0015936  coenzyme A metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0004420  hydroxymethylglutaryl-CoA reductase (NADPH) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0050661  NADP binding

GO:0050662  coenzyme binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000037s00002618.1PF00368.13HMG-CoA_red1835613.50E-158


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control121.989
SRR1783600control124.373
SRR1783602moderate drought stress83.342
SRR1811619moderate drought stress80.668

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.921
DRR006520Root Summer glycyrrhizin high producing strain28.597
DRR006521Root Winter glycyrrhizin high producing strain5.006
DRR006522Root Winter glycyrrhizin high producing strain4.884
DRR006523Root Summer glycyrrhizin low producing strain11.024
DRR006524Root Summer glycyrrhizin low producing strain10.784
DRR006525Leaf Summer glycyrrhizin high producing strain13.253
DRR006526Leaf Summer glycyrrhizin high producing strain13.342

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)181.969
SRR2868004Drought Stress(Tissue:root)101.429
SRR2967015Control (Tissue:root)113.424

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.540
SRR9715740Leave43.995
SRR9715741Leave80.644
SRR9715739Root108.941
SRR9715742Root267.626
SRR9715743Root230.152

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.608
SRR8749028MeJA induced 9h22.437
SRR8749029MeJA induced 9h9.159
SRR8749030Uninduced6.584
SRR8749031Uninduced1.790
SRR8749032Uninduced5.206

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root167.328
SRR8400027Control-Root166.465

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved