Gene detail information of Glyur000037s00002627.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G76410.12.00E-40RING/U-box superfamily protein
NRXP_003612411.11.76E-117Ring finger protein [Medicago truncatula]
Swissprottr|Q8LC69|ATL8_ARATH3.00E-63RING-H2 finger protein ATL8
trEMBLtr|G7K2K6|G7K2K6_MEDTR7.00E-118Uncharacterized protein {ECO:0000313|EMBL:AFK36320.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00037244147244803-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000037s00002627.1PF13639.1zf-RING_21051484.70E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control30.132
SRR1783600control23.503
SRR1783602moderate drought stress26.523
SRR1811619moderate drought stress26.399

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain51.156
DRR006520Root Summer glycyrrhizin high producing strain47.784
DRR006521Root Winter glycyrrhizin high producing strain132.875
DRR006522Root Winter glycyrrhizin high producing strain130.004
DRR006523Root Summer glycyrrhizin low producing strain26.355
DRR006524Root Summer glycyrrhizin low producing strain26.287
DRR006525Leaf Summer glycyrrhizin high producing strain38.176
DRR006526Leaf Summer glycyrrhizin high producing strain35.458

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.853
SRR2868004Drought Stress(Tissue:root)39.734
SRR2967015Control (Tissue:root)47.249

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave39.199
SRR9715740Leave30.755
SRR9715741Leave28.208
SRR9715739Root47.792
SRR9715742Root59.426
SRR9715743Root56.190

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.517
SRR8749028MeJA induced 9h9.975
SRR8749029MeJA induced 9h9.898
SRR8749030Uninduced0.608
SRR8749031Uninduced0.175
SRR8749032Uninduced3.204

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root66.781
SRR8400027Control-Root75.364

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved