Gene detail information of Glyur000037s00002655.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G20693.2 | 4.00E-23 | high mobility group B2 |
| NR | XP_004512267.1 | 5.76E-71 | PREDICTED: HMG1/2-like protein-like [Cicer arietinum] |
| Swissprot | tr|P40619|HMGL_IPONI | 1.00E-47 | HMG1/2-like protein |
| trEMBL | tr|I1MMW6|I1MMW6_SOYBN | 2.00E-66 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G22060.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 388260 | 389934 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002655.1 | PF00505.14 | HMG_box | 37 | 106 | 1.80E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.298 |
| SRR1783600 | control | 57.961 |
| SRR1783602 | moderate drought stress | 90.415 |
| SRR1811619 | moderate drought stress | 90.555 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 200.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 200.384 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 413.827 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 402.547 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 397.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 398.318 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 157.833 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 156.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 159.146 |
| SRR2868004 | Drought Stress(Tissue:root) | 111.722 |
| SRR2967015 | Control (Tissue:root) | 173.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 196.747 |
| SRR9715740 | Leave | 227.216 |
| SRR9715741 | Leave | 232.162 |
| SRR9715739 | Root | 55.168 |
| SRR9715742 | Root | 151.476 |
| SRR9715743 | Root | 128.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 344.143 |
| SRR8749028 | MeJA induced 9h | 252.602 |
| SRR8749029 | MeJA induced 9h | 289.279 |
| SRR8749030 | Uninduced | 130.096 |
| SRR8749031 | Uninduced | 50.122 |
| SRR8749032 | Uninduced | 62.741 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 179.639 |
| SRR8400027 | Control-Root | 174.246 |