Gene detail information of Glyur000037s00002660.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35590.1 | 3.00E-74 | RWP-RK domain-containing protein |
| NR | XP_003516525.1 | 0 | PREDICTED: protein RKD5-like [Glycine max] |
| Swissprot | tr|O81791|RKD5_ARATH | 2.00E-93 | Protein RKD5 |
| trEMBL | tr|I1J8D1|I1J8D1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G36360.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 411471 | 415452 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | RWP-RK |
| EAR motif-containing Proteins | RWP-RK |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002660.1 | PF02042.10 | RWP-RK | 208 | 257 | 5.30E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.460 |
| SRR1783600 | control | 0.404 |
| SRR1783602 | moderate drought stress | 0.079 |
| SRR1811619 | moderate drought stress | 0.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.213 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.240 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.109 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.061 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.185 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.443 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.088 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.456 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.310 |
| SRR2967015 | Control (Tissue:root) | 0.374 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.864 |
| SRR9715740 | Leave | 0.062 |
| SRR9715741 | Leave | 0.604 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.068 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.201 |
| SRR8749028 | MeJA induced 9h | 0.143 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 0.045 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.819 |
| SRR8400027 | Control-Root | 0.237 |