Gene detail information of Glyur000037s00002671.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35630.19.00E-166phosphoserine aminotransferase
NRXP_004512250.10PREDICTED: phosphoserine aminotransferase, chloroplastic-like [Cicer arietinum]
COGYP_003524682.14.00E-126phosphoserine aminotransferase [Sideroxydans lithotrophicus ES-1]
Swissprottr|Q96255|SERB1_ARATH0Phosphoserine aminotransferase 1, chloroplastic (Precursor)
trEMBLtr|V7CM42|V7CM42_PHAVU0Phosphoserine aminotransferase {ECO:0000256|RuleBase:RU004505}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00037484100486235+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00831serC, PSAT1 EC:2.6.1.52 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260
Vitamin B6 metabolismmap00750


Gene Ontology

biological_process

GO:0006564  L-serine biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004648  O-phospho-L-serine:2-oxoglutarate aminotransferase activity

GO:0030170  pyridoxal phosphate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000037s00002671.1PF00266.14Aminotran_5723875.50E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.127
SRR1783600control5.626
SRR1783602moderate drought stress6.173
SRR1811619moderate drought stress6.127

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.370
DRR006520Root Summer glycyrrhizin high producing strain7.186
DRR006521Root Winter glycyrrhizin high producing strain23.317
DRR006522Root Winter glycyrrhizin high producing strain22.551
DRR006523Root Summer glycyrrhizin low producing strain11.089
DRR006524Root Summer glycyrrhizin low producing strain11.983
DRR006525Leaf Summer glycyrrhizin high producing strain2.510
DRR006526Leaf Summer glycyrrhizin high producing strain2.380

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.030
SRR2868004Drought Stress(Tissue:root)28.182
SRR2967015Control (Tissue:root)15.746

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.964
SRR9715740Leave0.974
SRR9715741Leave1.713
SRR9715739Root5.083
SRR9715742Root34.146
SRR9715743Root25.824

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.874
SRR8749028MeJA induced 9h16.713
SRR8749029MeJA induced 9h29.315
SRR8749030Uninduced42.616
SRR8749031Uninduced20.108
SRR8749032Uninduced40.957

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.490
SRR8400027Control-Root9.271

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved