Gene detail information of Glyur000037s00002677.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G35260.11.00E-170isocitrate dehydrogenase 1
NRXP_004512246.10PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [Cicer arietinum]
COGYP_008088736.11.00E-108isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
Swissprottr|Q8LFC0|IDH1_ARATH0Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBLtr|I1LI93|I1LI93_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G08920.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00037515393519535+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00030IDH3 EC:1.1.1.41 Carbon metabolism map01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020


Gene Ontology

biological_process

GO:0006099  tricarboxylic acid cycle

GO:0055114  oxidation-reduction process


molecular_function

GO:0000287  magnesium ion binding

GO:0004449  isocitrate dehydrogenase (NAD+) activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000037s00002677.1PF00180.15Iso_dh383604.60E-78


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control54.083
SRR1783600control53.585
SRR1783602moderate drought stress51.434
SRR1811619moderate drought stress51.210

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain86.108
DRR006520Root Summer glycyrrhizin high producing strain85.813
DRR006521Root Winter glycyrrhizin high producing strain75.480
DRR006522Root Winter glycyrrhizin high producing strain73.752
DRR006523Root Summer glycyrrhizin low producing strain74.301
DRR006524Root Summer glycyrrhizin low producing strain75.045
DRR006525Leaf Summer glycyrrhizin high producing strain49.595
DRR006526Leaf Summer glycyrrhizin high producing strain50.105

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)88.924
SRR2868004Drought Stress(Tissue:root)70.760
SRR2967015Control (Tissue:root)70.442

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave48.039
SRR9715740Leave48.569
SRR9715741Leave53.244
SRR9715739Root46.908
SRR9715742Root52.444
SRR9715743Root48.652

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h55.515
SRR8749028MeJA induced 9h52.875
SRR8749029MeJA induced 9h42.965
SRR8749030Uninduced36.253
SRR8749031Uninduced25.376
SRR8749032Uninduced26.859

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root79.136
SRR8400027Control-Root71.919

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved