Gene detail information of Glyur000038s00004439.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29970.1 | 0 | Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_006602094.1 | 0 | PREDICTED: uncharacterized protein LOC100776148 [Glycine max] |
| COG | YP_001003798.1 | 5.00E-13 | ATPase [Halorhodospira halophila SL1] |
| Swissprot | tr|Q2QVG9|CLPC2_ORYSJ | 6.00E-11 | Chaperone protein ClpC2, chloroplastic (Precursor) |
| trEMBL | tr|I1MZZ3|I1MZZ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G06990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 1382 | 7633 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004439.1 | PF07724.9 | AAA_2 | 757 | 884 | 1.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.164 |
| SRR1783600 | control | 43.142 |
| SRR1783602 | moderate drought stress | 50.271 |
| SRR1811619 | moderate drought stress | 50.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 115.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 114.344 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.397 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.046 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 81.685 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 81.064 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 51.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 50.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.420 |
| SRR2868004 | Drought Stress(Tissue:root) | 61.036 |
| SRR2967015 | Control (Tissue:root) | 100.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.033 |
| SRR9715740 | Leave | 7.724 |
| SRR9715741 | Leave | 6.420 |
| SRR9715739 | Root | 8.406 |
| SRR9715742 | Root | 44.096 |
| SRR9715743 | Root | 35.464 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.310 |
| SRR8749028 | MeJA induced 9h | 5.778 |
| SRR8749029 | MeJA induced 9h | 2.827 |
| SRR8749030 | Uninduced | 4.517 |
| SRR8749031 | Uninduced | 0.960 |
| SRR8749032 | Uninduced | 0.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 52.386 |
| SRR8400027 | Control-Root | 65.042 |