Gene detail information of Glyur000038s00004441.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55950.1 | 5.00E-175 | CRINKLY4 related 3 |
| NR | XP_003552952.1 | 0 | PREDICTED: putative serine/threonine-protein kinase-like protein CCR3-like [Glycine max] |
| COG | YP_001958461.1 | 8.00E-22 | hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|Q9LY50|ACCR3_ARATH | 0 | Putative serine/threonine-protein kinase-like protein CCR3 (Precursor) |
| trEMBL | tr|K7MQ95|K7MQ95_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G07000.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 31027 | 33489 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.4.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004441.1 | PF00069.20 | Pkinase | 510 | 793 | 9.70E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.367 |
| SRR1783600 | control | 3.307 |
| SRR1783602 | moderate drought stress | 2.256 |
| SRR1811619 | moderate drought stress | 2.225 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.212 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.623 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.579 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.010 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.085 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.316 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.306 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.307 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.034 |
| SRR2967015 | Control (Tissue:root) | 9.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.134 |
| SRR9715740 | Leave | 0.027 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 1.887 |
| SRR9715742 | Root | 4.531 |
| SRR9715743 | Root | 3.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.359 |
| SRR8749028 | MeJA induced 9h | 0.594 |
| SRR8749029 | MeJA induced 9h | 0.722 |
| SRR8749030 | Uninduced | 0.543 |
| SRR8749031 | Uninduced | 0.093 |
| SRR8749032 | Uninduced | 0.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.065 |
| SRR8400027 | Control-Root | 7.098 |