Gene detail information of Glyur000038s00004444.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01450.1 | 3.00E-47 | RING/U-box superfamily protein |
| NR | KEH34271.1 | 1.59E-123 | ubiquitin-protein ligase, putative [Medicago truncatula] |
| trEMBL | tr|A0A072UXU7|A0A072UXU7_MEDTR | 6.00E-124 | Ubiquitin-protein ligase, putative {ECO:0000313|EMBL:KEH34271.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 42014 | 44348 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004444.1 | PF13920.1 | zf-C3HC4_3 | 288 | 315 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.121 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.101 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.353 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.269 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.021 |
| SRR2967015 | Control (Tissue:root) | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.187 |
| SRR9715740 | Leave | 5.137 |
| SRR9715741 | Leave | 3.181 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.059 |
| SRR8400027 | Control-Root | 0.182 |