Gene detail information of Glyur000038s00004450.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47160.1 | 1.00E-68 | RING/U-box superfamily protein |
| NR | NP_001240279.1 | 3.64E-140 | uncharacterized protein LOC100808567 [Glycine max] |
| trEMBL | tr|C6T3M9|C6T3M9_SOYBN | 1.00E-140 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G07090.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 83274 | 87488 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004450.2 | PF13920.1 | zf-C3HC4_3 | 144 | 190 | 5.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.793 |
| SRR1783600 | control | 12.721 |
| SRR1783602 | moderate drought stress | 15.192 |
| SRR1811619 | moderate drought stress | 14.830 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.584 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 47.386 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 46.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.721 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.802 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.708 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.052 |
| SRR2868004 | Drought Stress(Tissue:root) | 13.036 |
| SRR2967015 | Control (Tissue:root) | 21.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.404 |
| SRR9715740 | Leave | 5.487 |
| SRR9715741 | Leave | 5.031 |
| SRR9715739 | Root | 4.621 |
| SRR9715742 | Root | 5.080 |
| SRR9715743 | Root | 4.595 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.664 |
| SRR8749028 | MeJA induced 9h | 59.240 |
| SRR8749029 | MeJA induced 9h | 22.305 |
| SRR8749030 | Uninduced | 3.574 |
| SRR8749031 | Uninduced | 8.603 |
| SRR8749032 | Uninduced | 7.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.466 |
| SRR8400027 | Control-Root | 9.430 |