Gene detail information of Glyur000038s00004469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G09020.10isoamylase 3
NRXP_004501686.10PREDICTED: isoamylase 3, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_007061795.12.00E-166glycogen debranching protein GlgX [Synechococcus sp. PCC 6312]
Swissprottr|Q9M0S5|ISOA3_ARATH0Isoamylase 3, chloroplastic (Precursor)
trEMBLtr|K7KU93|K7KU93_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G10540.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038175804189382-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM48,GH13


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01214ISA, treX EC:3.2.1.68 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0043169  cation binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004469.1PF02922.13CBM_481252235.20E-11
Glyur000038s00004469.1PF00128.19Alpha-amylase2933942.70E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control23.687
SRR1783600control23.784
SRR1783602moderate drought stress23.592
SRR1811619moderate drought stress23.488

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.337
DRR006520Root Summer glycyrrhizin high producing strain29.390
DRR006521Root Winter glycyrrhizin high producing strain28.988
DRR006522Root Winter glycyrrhizin high producing strain27.935
DRR006523Root Summer glycyrrhizin low producing strain21.066
DRR006524Root Summer glycyrrhizin low producing strain20.874
DRR006525Leaf Summer glycyrrhizin high producing strain33.637
DRR006526Leaf Summer glycyrrhizin high producing strain32.957

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.841
SRR2868004Drought Stress(Tissue:root)14.760
SRR2967015Control (Tissue:root)21.507

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.093
SRR9715740Leave14.807
SRR9715741Leave9.127
SRR9715739Root4.122
SRR9715742Root15.940
SRR9715743Root12.670

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.314
SRR8749028MeJA induced 9h21.063
SRR8749029MeJA induced 9h10.092
SRR8749030Uninduced10.324
SRR8749031Uninduced5.654
SRR8749032Uninduced4.896

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.062
SRR8400027Control-Root40.503

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved