Gene detail information of Glyur000038s00004475.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G11870.10Seryl-tRNA synthetase
NRXP_003602834.10Seryl-tRNA synthetase [Medicago truncatula]
COGYP_005063952.16.00E-146seryl-tRNA synthetase [Sphaerochaeta pleomorpha str. Grapes]
Swissprottr|Q39230|SYS_ARATH4.00E-77Serine--tRNA ligase
trEMBLtr|G7J3Z0|G7J3Z0_MEDTR0Seryl-tRNA synthetase/serine-tRNA ligase {ECO:0000313|EMBL:AES73085.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038227315231515-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01875SARS, serS EC:6.1.1.11 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006434  seryl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004828  serine-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004475.1PF02403.17Seryl_tRNA_N861931.30E-17
Glyur000038s00004475.1PF00587.20tRNA-synt_2b2594277.50E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.226
SRR1783600control3.248
SRR1783602moderate drought stress6.543
SRR1811619moderate drought stress6.521

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.170
DRR006520Root Summer glycyrrhizin high producing strain2.204
DRR006521Root Winter glycyrrhizin high producing strain3.373
DRR006522Root Winter glycyrrhizin high producing strain3.326
DRR006523Root Summer glycyrrhizin low producing strain2.177
DRR006524Root Summer glycyrrhizin low producing strain2.187
DRR006525Leaf Summer glycyrrhizin high producing strain24.736
DRR006526Leaf Summer glycyrrhizin high producing strain24.472

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.406
SRR2868004Drought Stress(Tissue:root)4.968
SRR2967015Control (Tissue:root)4.560

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.520
SRR9715740Leave39.061
SRR9715741Leave26.261
SRR9715739Root1.790
SRR9715742Root2.227
SRR9715743Root2.099

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.933
SRR8749028MeJA induced 9h6.493
SRR8749029MeJA induced 9h3.798
SRR8749030Uninduced4.670
SRR8749031Uninduced1.638
SRR8749032Uninduced1.784

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.767
SRR8400027Control-Root5.669

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved