Gene detail information of Glyur000038s00004477.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G22440.1 | 9.00E-133 | Zinc-binding alcohol dehydrogenase family protein |
NR | XP_003602833.1 | 0 | Alcohol dehydrogenase-like protein [Medicago truncatula] |
COG | YP_003147226.1 | 2.00E-102 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069] |
Swissprot | tr|Q9SK87|ADHL2_ARATH | 3.00E-173 | Alcohol dehydrogenase-like 2 |
trEMBL | tr|G7J3Y9|G7J3Y9_MEDTR | 0 | Zinc-binding alcohol dehydrogenase family protein {ECO:0000313|EMBL:AES73084.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00038 | 236908 | 241704 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000038s00004477.1 | PF08240.7 | ADH_N | 67 | 153 | 7.60E-09 |
Glyur000038s00004477.1 | PF00107.21 | ADH_zinc_N | 195 | 326 | 1.50E-21 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 2.916 |
SRR1783600 | control | 2.930 |
SRR1783602 | moderate drought stress | 1.847 |
SRR1811619 | moderate drought stress | 1.775 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.556 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 0.467 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 0.155 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 0.178 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.895 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.753 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 27.975 |
SRR2868004 | Drought Stress(Tissue:root) | 19.316 |
SRR2967015 | Control (Tissue:root) | 26.793 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 1.966 |
SRR9715740 | Leave | 1.447 |
SRR9715741 | Leave | 1.560 |
SRR9715739 | Root | 6.047 |
SRR9715742 | Root | 1.344 |
SRR9715743 | Root | 3.136 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.000 |
SRR8749028 | MeJA induced 9h | 0.152 |
SRR8749029 | MeJA induced 9h | 0.121 |
SRR8749030 | Uninduced | 0.019 |
SRR8749031 | Uninduced | 0.154 |
SRR8749032 | Uninduced | 0.046 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 22.784 |
SRR8400027 | Control-Root | 21.729 |