Gene detail

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Gene detail information of Glyur000038s00004482.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G78280.1	0	transferases, transferring glycosyl groups
NR	XP_003526572.1	0	PREDICTED: F-box protein At1g78280-like [Glycine max]
COG	YP_004752438.1	3.00E-14	hypothetical protein CFU_1783 [Collimonas fungivorans Ter331]
Swissprot	tr\|Q9M9E8\|FB92_ARATH	0	F-box protein At1g78280
trEMBL	tr\|I1K9W2\|I1K9W2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G10660.2}

Sequence

Transcript Sequence

>Glyur000038s00004482.1
GTAATAACCGTCGGGAGGAAGATATAGCCTCAGGCGAGTTGAGGTGGCGTAAGAATAACGAACACGGGTCGGAAGCGCTTCAAGAAAAAGTAAAAAAAAAACACAAAAACGCGGTTGAGCGCAGCGTAGGAACGAATAATATTATGAATGAATATATTCAATTCAGCGCAGCAGCGGAAGACAAGAGAAATTGAAATTGGCATTTGATGATGGAGGCTCATACACAACATAGTCAGAGAGATCGTAGGACANATGCTCTCGGAGATCTTCGAGTTCTTCCCGACGAAATCCTCTGCGCTATTTTGGAACGACTCACTCCCCGAGATGCTGCTCGCATCGCTTGCGTTAGCAGTGTGATGTACATACTATGCAATGAAGAACCACTGTGGATGACTCTATGCCTAAAAGGTGCATCTGGTTTCCTTCAATACAAAGGCTCTTGGAAGAAAACTGCTCTGCATAATGAGAATCTGCCAGACAAGTACAAAGAGTGCCATCAACGGCCTTTATATTTTGATGGATTCAACTCTTTATTTTTGTACCGGAGATTATACCGGTGTCATACCACATTGGAAGCATTTTATGCAGATGATGGGAATGTGGAAAGAGTAAAGGACATCTCATTGAAGGACTTCTATAACGAGTATGACGCGAAGAAACCGGTTATGCTNAATGGATTGGCTGATACATGGCCTGCCAGGCATAAATGGACAACTGATCAGCTGTTACTAAATTATGGAGACGTAGCATTTAAAATTTCTCAAAGGAGTTCCCGGAAGATCTCCATGAAGTTCAAGGATTATGTCGCTTACATGAAAGTTCAGCATGATGAAGACCCCTTATATATTTTTGATGAAAAGGTGCTTGTATTGAGATATTCATGTTTCCATAATGCTCTGCCCTGTCTCCCTGAACCACTCACTTCCCTTTTTCTTTTTGGCGAAGTTTCACCTAGCTTATTGAAAGATTATTGTGTGCCTCATCTTTTTCAAGAAGACTTCTTTGGTATCTTAGATACAGATAAACGACCGTCCTATAGGTGGCTCATAATTGGACCTGAGAGATCTGGTGCCTCTTGGCATGTTGATCCAGCTCTTACCAGTGCATGGAATACTCTTCTTTCGGGCCGTAAAAGATGGGCATTATACCCTCCTGGAAAGGTGCCTTTAGGTGTGACGGTGCATGTAAATGAAGATGATGGTGATGTCAATGTTGAAACTCCATCATCACTGCAGTGGTGGCTAGATTTTTATCCTCTTCTTCCTGATGAAGACAAGCCAATTGAATGCACACAACTACCTGGAGAGACAATTTATGTTCCAAGTGGATGGTGGCACTGTGTTCTAAATTTGGAAACAACTATTGCAGTCACGCAGAATTTTGTGAATTCCAATAATTTCGAATTTGTATGTTTGGATATGGCACCTGGTTATCGTCACAAAGGAGTTTGCCGTGTTGGGTTGCTTGCTCTTGATGAAGATAGTTATGAAAATGTCATACAGAACATGTCATGTAATGGAAAAAACTTAAGTTACTCTGATTTGTCAAGGAAAGAGAAAAGAGCCAAAACTCTGAAAGATGTAGATGATCTATATAATGAAAGAGCCATAAGTGGTGTATCTAGAAGCTATAATTTATGGAAAGATGGATTTTCCTATGATATAAATTTCTTATCCATGTTTCTGGATAAGGACAGAGACCACTACAGTTCCCTGTGGAGCTCGGGCAACAGCATTGGTCAGCGAGAACTAAGAGAATGGTTATCCAAGCTTTGGATTCAAAAACCAAAAATGAGAGATCTAATATGGAAGGGAGCGTGTATTGCACTAAATGCTGGCAAGTGGTTAGAATGTCTATCAAAAATTTGTGCCTTCCACAATTTGCCCCCTCCCACTGATGACGAAAAACTTCCTGTTGGTACGGGTAGCAATCCTGTTTATCTAGTGGGGAACTCTGTTGTTAAGATTTTTGTCGAAGGAGGACTGGAAGCGTCACTTTATTGTTTAGGCACAGAGCTAGAGTTTTACAGTCTGCTGCTTGAAGCCAACTCCCCTCTCAGGAAACATATTCCTAGTGTTTTGGCCAGTGGGATTGTTTATTTTGAAGATGGATCTTATGCCAATTTAAGTTGGGACGGAAAAGGAATCCCTAGTGTCATTATGAAGAGCGATATTATCAAGAAGAAATGTGATGCTGATAGTTTCTCATTTGGAGTATGGGGCAAGAAACTGTTAGAGTATAGGAATGCTGGGATGCCGGTGGATGGATCAGTTAGTTTAGCTGGTCACTCAAGCATATGGCCATATGTGATAACAAAACGATGTGAAGGGAATATGTTTGCAGAGTTAAGAGACAAATTATCGTGGGAAGATACAACAAACTTGGCCTCCTTCTTGGGAGAGCAGCTGCACCACCTTCATCTTTTGCCACATCCACCTTTAAACATTTCATCTTTATCCGATGAATTAAGCTTGTCCGAGGCTAATGGTTGTATTGCAACTGTTGATTGTAAATCGAACACTGCAGCAGAATGGGGAATCTTCACCAGAACGTTAACAAAGAAGAGGAAGGAGGTCTCAAGCCGTCTGACCAAGGGTGATCCAATTCCTAGCAAACTGATTGAGAAAATTGATGAATATATCCCACCTGATTTTGNTAAGCTGCTAAATATAACCGAGAATTTCTCAAGTGGTGCGTGTAAACCCTTCTCCTGGATACACACTGACATTATGGATGATAACATTTACATGGAACCATCATTGGTTTGCTCTACCTCCTGTGGGAATACAGAAGATGTTGCCCGGGTGGACAATGGTTTATTGAGTGACCATGAAGTGAAATCCTGGTGCCCTAGTTACATCCTTGATTTCAGTGATCTTTCTATAGGCGATCCTATTTTTGACTTGATACCAATTTATTTAGACGTGTTTAGAGGTGATTCGTATCTCCTTAAGAGGTTTTTAGAAAGTTACAAACTTCCTTTTGCTGGTAACATATCAAAGATTGATTCAACAGAGGATGGTCAAAAGTTTGGCCGACTTTCATATGTTGTTATGTGTTATTGTATTTTGCATGATGATAACGTCTTGGGAGCTATTTTTAGCATATGGGAAGAACTGAGATCAGCAGAGTCATGGGAAGAAGTTGAGCTGACAGTGTGGGGGGAGTTGAACAATTACAAAGGCTTCCTTTGACCATTCGCAGCATGTAAATATTTTCGGAGCCTGAACGCTCATCAGAGGCCCAGTGATAATACATGTTTAAATTCTCTAGTACCAAAAAAAGGAACCCCCTCGGGGGGAGGGGGGGTAATGTATCAATCGGTTGCCTGTTAGGTCTTTTTATTGATTATATTCTGTTTTTTTGTTTATAATAAAGTGTC

Protein Sequence

>Glyur000038s00004482.1
MMEAHTQHSQRDRRTXALGDLRVLPDEILCAILERLTPRDAARIACVSSVMYILCNEEPLWMTLCLKGASGFLQYKGSWKKTALHNENLPDKYKECHQRPLYFDGFNSLFLYRRLYRCHTTLEAFYADDGNVERVKDISLKDFYNEYDAKKPVMLNGLADTWPARHKWTTDQLLLNYGDVAFKISQRSSRKISMKFKDYVAYMKVQHDEDPLYIFDEKVLVLRYSCFHNALPCLPEPLTSLFLFGEVSPSLLKDYCVPHLFQEDFFGILDTDKRPSYRWLIIGPERSGASWHVDPALTSAWNTLLSGRKRWALYPPGKVPLGVTVHVNEDDGDVNVETPSSLQWWLDFYPLLPDEDKPIECTQLPGETIYVPSGWWHCVLNLETTIAVTQNFVNSNNFEFVCLDMAPGYRHKGVCRVGLLALDEDSYENVIQNMSCNGKNLSYSDLSRKEKRAKTLKDVDDLYNERAISGVSRSYNLWKDGFSYDINFLSMFLDKDRDHYSSLWSSGNSIGQRELREWLSKLWIQKPKMRDLIWKGACIALNAGKWLECLSKICAFHNLPPPTDDEKLPVGTGSNPVYLVGNSVVKIFVEGGLEASLYCLGTELEFYSLLLEANSPLRKHIPSVLASGIVYFEDGSYANLSWDGKGIPSVIMKSDIIKKKCDADSFSFGVWGKKLLEYRNAGMPVDGSVSLAGHSSIWPYVITKRCEGNMFAELRDKLSWEDTTNLASFLGEQLHHLHLLPHPPLNISSLSDELSLSEANGCIATVDCKSNTAAEWGIFTRTLTKKRKEVSSRLTKGDPIPSKLIEKIDEYIPPDFXKLLNITENFSSGACKPFSWIHTDIMDDNIYMEPSLVCSTSCGNTEDVARVDNGLLSDHEVKSWCPSYILDFSDLSIGDPIFDLIPIYLDVFRGDSYLLKRFLESYKLPFAGNISKIDSTEDGQKFGRLSYVVMCYCILHDDNVLGAIFSIWEELRSAESWEEVELTVWGELNNYKGFL

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	275322	284492	-

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004482.1	PF12937.2	F-box-like	23	67	2.10E-08
Glyur000038s00004482.1	PF13621.1	Cupin_8	143	396	1.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.874
SRR1783600	control	6.893
SRR1783602	moderate drought stress	5.490
SRR1811619	moderate drought stress	5.425

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.603
DRR006520	Root Summer glycyrrhizin high producing strain	15.756
DRR006521	Root Winter glycyrrhizin high producing strain	11.604
DRR006522	Root Winter glycyrrhizin high producing strain	11.112
DRR006523	Root Summer glycyrrhizin low producing strain	50.672
DRR006524	Root Summer glycyrrhizin low producing strain	51.317
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.641
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.633

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.885
SRR2868004	Drought Stress(Tissue:root)	33.175
SRR2967015	Control (Tissue:root)	26.276

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	40.692
SRR9715740	Leave	22.225
SRR9715741	Leave	39.741
SRR9715739	Root	13.259
SRR9715742	Root	47.996
SRR9715743	Root	44.366

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.959
SRR8749028	MeJA induced 9h	44.790
SRR8749029	MeJA induced 9h	30.972
SRR8749030	Uninduced	59.845
SRR8749031	Uninduced	59.587
SRR8749032	Uninduced	42.320

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	17.953
SRR8400027	Control-Root	20.882