Gene detail information of Glyur000038s00004484.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67340.1 | 3.00E-108 | HCP-like superfamily protein with MYND-type zinc finger |
| NR | XP_003523145.1 | 0 | PREDICTED: F-box protein At1g67340 [Glycine max] |
| Swissprot | tr|Q9FYF9|FB76_ARATH | 2.00E-142 | F-box protein At1g67340 |
| trEMBL | tr|V7AW83|V7AW83_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW09907.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 296149 | 297972 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004484.1 | PF08238.7 | Sel1 | 90 | 109 | 1 |
| Glyur000038s00004484.1 | PF08238.7 | Sel1 | 163 | 192 | 0.27 |
| Glyur000038s00004484.1 | PF01753.13 | zf-MYND | 272 | 311 | 1.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.596 |
| SRR1783600 | control | 22.922 |
| SRR1783602 | moderate drought stress | 26.633 |
| SRR1811619 | moderate drought stress | 26.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.207 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 58.764 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 57.143 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.323 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.234 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.868 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.549 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.617 |
| SRR2967015 | Control (Tissue:root) | 28.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.864 |
| SRR9715740 | Leave | 3.301 |
| SRR9715741 | Leave | 5.510 |
| SRR9715739 | Root | 24.557 |
| SRR9715742 | Root | 15.978 |
| SRR9715743 | Root | 15.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 34.043 |
| SRR8749028 | MeJA induced 9h | 83.113 |
| SRR8749029 | MeJA induced 9h | 41.960 |
| SRR8749030 | Uninduced | 41.663 |
| SRR8749031 | Uninduced | 92.538 |
| SRR8749032 | Uninduced | 99.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.755 |
| SRR8400027 | Control-Root | 22.036 |