Gene detail information of Glyur000038s00004485.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05350.1 | 5.00E-159 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_003602810.1 | 0 | Ubiquitin-like modifier-activating enzyme [Medicago truncatula] |
| COG | YP_006759350.1 | 1.00E-23 | molybdopterin biosynthesis protein MoeB [Desulfobacula toluolica Tol2] |
| Swissprot | tr|O23034|UBA5_ARATH | 0 | Ubiquitin-like modifier-activating enzyme 5 |
| trEMBL | tr|G7J3W6|G7J3W6_MEDTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK46591.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 311156 | 316601 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | ThiF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004485.1 | PF00899.16 | ThiF | 85 | 214 | 4.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.831 |
| SRR1783600 | control | 23.093 |
| SRR1783602 | moderate drought stress | 15.691 |
| SRR1811619 | moderate drought stress | 15.926 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.815 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.817 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.591 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 35.944 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.129 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.365 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.606 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 70.691 |
| SRR2868004 | Drought Stress(Tissue:root) | 50.988 |
| SRR2967015 | Control (Tissue:root) | 50.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.502 |
| SRR9715740 | Leave | 21.436 |
| SRR9715741 | Leave | 26.951 |
| SRR9715739 | Root | 15.215 |
| SRR9715742 | Root | 24.130 |
| SRR9715743 | Root | 24.220 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 72.290 |
| SRR8749028 | MeJA induced 9h | 56.438 |
| SRR8749029 | MeJA induced 9h | 50.867 |
| SRR8749030 | Uninduced | 50.808 |
| SRR8749031 | Uninduced | 35.144 |
| SRR8749032 | Uninduced | 32.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 54.308 |
| SRR8400027 | Control-Root | 51.724 |