Gene detail information of Glyur000038s00004489.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48560.10chlorsulfuron/imidazolinone resistant 1
NRABY57316.10acetolactate synthase [Medicago littoralis]
COGYP_003370314.10acetolactate synthase large subunit [Pirellula staleyi DSM 6068]
Swissprottr|P27819|ILVB3_BRANA0Acetolactate synthase 3, chloroplastic (Precursor)
trEMBLtr|B0FBK4|B0FBK4_9FABA0Acetolactate synthase {ECO:0000256|RuleBase:RU003591}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038326316328310-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01652E2.2.1.6L, ilvB, ilvG, ilvI EC:2.2.1.6 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
Butanoate metabolismmap00650
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290
Pantothenate and CoA biosynthesismap00770


Gene Ontology

biological_process

GO:0009082  branched-chain amino acid biosynthetic process


molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0003984  acetolactate synthase activity

GO:0030976  thiamine pyrophosphate binding

GO:0050660  flavin adenine dinucleotide binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004489.1PF02776.13TPP_enzyme_N902541.30E-54
Glyur000038s00004489.1PF00205.17TPP_enzyme_M2824122.40E-36
Glyur000038s00004489.1PF02775.16TPP_enzyme_C4786335.10E-47


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.145
SRR1783600control41.471
SRR1783602moderate drought stress30.237
SRR1811619moderate drought stress30.893

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain17.241
DRR006520Root Summer glycyrrhizin high producing strain16.385
DRR006521Root Winter glycyrrhizin high producing strain4.929
DRR006522Root Winter glycyrrhizin high producing strain4.993
DRR006523Root Summer glycyrrhizin low producing strain23.965
DRR006524Root Summer glycyrrhizin low producing strain24.243
DRR006525Leaf Summer glycyrrhizin high producing strain42.178
DRR006526Leaf Summer glycyrrhizin high producing strain42.346

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)30.777
SRR2868004Drought Stress(Tissue:root)19.871
SRR2967015Control (Tissue:root)16.571

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.856
SRR9715740Leave21.737
SRR9715741Leave29.065
SRR9715739Root60.418
SRR9715742Root75.091
SRR9715743Root70.723

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.954
SRR8749028MeJA induced 9h18.727
SRR8749029MeJA induced 9h9.115
SRR8749030Uninduced9.345
SRR8749031Uninduced4.435
SRR8749032Uninduced4.580

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.226
SRR8400027Control-Root28.744

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved