Gene detail information of Glyur000038s00004491.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G48590.12.00E-82nuclear factor Y, subunit C1
NRXP_003526954.11.54E-122PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max]
Swissprottr|Q9SMP0|NFYC1_ARATH4.00E-105Nuclear transcription factor Y subunit C-1
trEMBLtr|I1KC24|I1KC24_SOYBN6.00E-123Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G17780.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038331694335318-


Gene family

Gene familysubfamily
Transcription Factors FamilyNF-YC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005622  intracellular

GO:0016602  CCAAT-binding factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

GO:0046982  protein heterodimerization activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004491.1PF00808.18CBFD_NFYB_HMF601235.20E-21


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control149.384
SRR1783600control150.479
SRR1783602moderate drought stress149.520
SRR1811619moderate drought stress147.651

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain92.772
DRR006520Root Summer glycyrrhizin high producing strain91.967
DRR006521Root Winter glycyrrhizin high producing strain71.796
DRR006522Root Winter glycyrrhizin high producing strain70.718
DRR006523Root Summer glycyrrhizin low producing strain77.870
DRR006524Root Summer glycyrrhizin low producing strain85.032
DRR006525Leaf Summer glycyrrhizin high producing strain172.643
DRR006526Leaf Summer glycyrrhizin high producing strain171.673

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)98.329
SRR2868004Drought Stress(Tissue:root)96.334
SRR2967015Control (Tissue:root)108.490

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave77.001
SRR9715740Leave64.036
SRR9715741Leave70.203
SRR9715739Root77.935
SRR9715742Root60.687
SRR9715743Root66.456

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h99.613
SRR8749028MeJA induced 9h96.465
SRR8749029MeJA induced 9h96.141
SRR8749030Uninduced60.902
SRR8749031Uninduced38.647
SRR8749032Uninduced52.322

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root90.996
SRR8400027Control-Root87.292

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved