Gene detail information of Glyur000038s00004501.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G63520.11.00E-108
NRXP_004501713.10PREDICTED: F-box/LRR-repeat protein At5g63520-like [Cicer arietinum]
COGYP_001659254.11.00E-18hypothetical protein MAE_42400 [Microcystis aeruginosa NIES-843]
Swissprottr|Q9FMV0|FBL91_ARATH2.00E-130F-box/LRR-repeat protein At5g63520
trEMBLtr|G7J3V2|G7J3V2_MEDTR0F-box/LRR plant protein {ECO:0000313|EMBL:AES73047.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038371219377362-


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004501.1PF00646.28F-box29682.70E-05
Glyur000038s00004501.1PF10442.4FIST_C4045002.90E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.622
SRR1783600control11.874
SRR1783602moderate drought stress14.691
SRR1811619moderate drought stress14.447

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.589
DRR006520Root Summer glycyrrhizin high producing strain18.349
DRR006521Root Winter glycyrrhizin high producing strain16.278
DRR006522Root Winter glycyrrhizin high producing strain16.171
DRR006523Root Summer glycyrrhizin low producing strain12.685
DRR006524Root Summer glycyrrhizin low producing strain12.743
DRR006525Leaf Summer glycyrrhizin high producing strain9.751
DRR006526Leaf Summer glycyrrhizin high producing strain9.873

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.387
SRR2868004Drought Stress(Tissue:root)21.462
SRR2967015Control (Tissue:root)25.182

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.996
SRR9715740Leave10.971
SRR9715741Leave8.735
SRR9715739Root17.479
SRR9715742Root13.800
SRR9715743Root14.016

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.626
SRR8749028MeJA induced 9h16.062
SRR8749029MeJA induced 9h7.602
SRR8749030Uninduced7.364
SRR8749031Uninduced5.350
SRR8749032Uninduced3.191

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root19.203
SRR8400027Control-Root19.885

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved