Gene detail

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Gene detail information of Glyur000038s00004503.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50570.2	6.00E-52	Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
NR	XP_003602795.1	0	Squamosa promoter binding protein [Medicago truncatula]
Swissprot	tr\|P0DI11\|SP13B_ARATH	4.00E-61	Squamosa promoter-binding-like protein 13B
trEMBL	tr\|G7J3V1\|G7J3V1_MEDTR	0	Squamosa promoter-binding 13A-like protein {ECO:0000313\|EMBL:AES73046.1}

Sequence

Transcript Sequence

>Glyur000038s00004503.1
TCATGCAATTGTGAATCATAAACATATACAGAAGGTAACCAAACAAAGAGGGACTTTGAAGAAGCAGAGCTGAAAAAAGTGGTTTTTTAATTCATTTTACTACTTTTTGTAGTAATGGACTGGAATTTGAAAGCACCTTCTTGGGATTTGGGGGATGTGGATGAGGCAAACTTACCCAACATGGAAACAATGGATGAATCAAGCAGATTTGGAGTGTATAGAGTGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGGCNCTGAAGTTTCAGCACTACCCCAAATGCACAAAGATGCTTCTTCTGCTGCTGTTGTCTCCAAAATGGCACCCCCAGCTCCTTCAGGGTCTTCTAAGAGAGCTAGAGCCATTAATAACTCAACAGTGACAGTGTCATGTCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGCAGAGATTATCATAGGCGCCATAAGGTCTGTGAACTCCATTCCAAGACCCCAGAGGTCACAATTGGTGGCCTNAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCTCTGGAGCAGTTTGANGAAAGAAAAAGAAGCTGCAGGAAACGCTTAGATGGACACAACCGAAGGAGAAGAAAGCCTCAACCAGAACCTCTCACGCGACCTGGTAGTTTTTTGTCCAATTACCAAGGCACCCATTTGCTACCCTTCTCAAGTTCCAGTGGCATGGTGAACCCCTCTTGGAGTACTGGTGGACTCGTTACTTCCAGTGCTGGTGGTATAACTAGGATGCACATCCACAATAACCAACACCAACAAGTGCATGTGGTTGATCATAAACAAGATCTTTTCCTTGGAACAACTCCAACCAGCTATAGAGATCAAGGGAAGCAACTAGCATTCTTACATGGTGATCACAACACACTCAATAATCACCAAAACCCAAACCCACATCTCCCTGTTGCTTCTTCTGTGTGCCAAACACTTCTCAGGAGCAGTCCTTTGTCATCAGAAAGTAGTTGTGGGAACGTGAGAAGCAAATTAATGTTCTGTGATAATAATAATAATAATAGCATAACAAGTGCAGTCCAGGACACTCCTTGTGCTCTCTCTCTTCTGTCATCATCATCACAGACACATACACCTGGGAATGGTTTGAATCAAATGGTGCAGGTGCAGCCTCATCACTCGATGTCCCTTATGCAACCCTTAGGCCTTAGCCTGCATGGTAACAACATCTATGAGTCCATGGAACGAGTCTTGGTTCACAATGGGAGTGAGAGTGATCACCATTGTTCCTCAATGTATAACATGGGTTCTGATGGATCCCAGGGCAATGATGCCCCTCAACTTTTCCCCTATCAATGGGATTAGTAGAGAATTTTTACAGTTATAAGGATGCATTCACCCTTTGTTTTTACCCACGGACTGCTTAATTGTGATCCCCCCACCCCCTTTTTTTGATGAAAGTAATGAACCATCGTGAAATTTATATCTC

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	383981	387108	-

Gene family

Gene family	subfamily
Transcription Factors Family	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004503.1	PF03110.9	SBP	100	176	4.90E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.401
SRR1783600	control	3.506
SRR1783602	moderate drought stress	4.955
SRR1811619	moderate drought stress	5.007

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.243
DRR006520	Root Summer glycyrrhizin high producing strain	5.118
DRR006521	Root Winter glycyrrhizin high producing strain	1.338
DRR006522	Root Winter glycyrrhizin high producing strain	1.345
DRR006523	Root Summer glycyrrhizin low producing strain	4.918
DRR006524	Root Summer glycyrrhizin low producing strain	4.920
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.124

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.676
SRR2868004	Drought Stress(Tissue:root)	3.343
SRR2967015	Control (Tissue:root)	3.301

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.628
SRR9715740	Leave	0.316
SRR9715741	Leave	0.329
SRR9715739	Root	0.882
SRR9715742	Root	1.206
SRR9715743	Root	1.162

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.054
SRR8749028	MeJA induced 9h	1.297
SRR8749029	MeJA induced 9h	1.299
SRR8749030	Uninduced	1.310
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.551

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.846
SRR8400027	Control-Root	6.965