Gene detail information of Glyur000038s00004507.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08510.12.00E-85fatty acyl-ACP thioesterases B
NRXP_004501716.10PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Cicer arietinum]
COGYP_431036.16.00E-21Acyl-ACP thioesterase [Moorella thermoacetica ATCC 39073]
Swissprottr|Q9SJE2|FATB_ARATH3.00E-96Palmitoyl-acyl carrier protein thioesterase, chloroplastic (Precursor)
trEMBLtr|K7KL76|K7KL76_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G37420.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00038437970456850-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10781FATB EC:3.1.2.14 3.1.2.21 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process


molecular_function

GO:0016790  thiolester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000038s00004507.1PF01643.12Acyl-ACP_TE1153883.80E-84
Glyur000038s00004507.1PF01643.12Acyl-ACP_TE4895331.40E-06
Glyur000038s00004507.1PF01643.12Acyl-ACP_TE5396341.60E-22
Glyur000038s00004507.1PF01643.12Acyl-ACP_TE6357148.70E-09
Glyur000038s00004507.1PF01643.12Acyl-ACP_TE81810847.20E-90


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.159
SRR1783600control3.108
SRR1783602moderate drought stress1.753
SRR1811619moderate drought stress1.784

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.689
DRR006520Root Summer glycyrrhizin high producing strain0.824
DRR006521Root Winter glycyrrhizin high producing strain0.135
DRR006522Root Winter glycyrrhizin high producing strain0.150
DRR006523Root Summer glycyrrhizin low producing strain0.425
DRR006524Root Summer glycyrrhizin low producing strain0.454
DRR006525Leaf Summer glycyrrhizin high producing strain1.966
DRR006526Leaf Summer glycyrrhizin high producing strain1.978

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.678
SRR2868004Drought Stress(Tissue:root)9.920
SRR2967015Control (Tissue:root)8.952

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.239
SRR9715740Leave0.353
SRR9715741Leave0.345
SRR9715739Root0.484
SRR9715742Root1.512
SRR9715743Root1.064

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.272
SRR8749028MeJA induced 9h1.466
SRR8749029MeJA induced 9h2.525
SRR8749030Uninduced0.174
SRR8749031Uninduced0.166
SRR8749032Uninduced0.482

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.342
SRR8400027Control-Root26.550

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved