Gene detail information of Glyur000039s00004191.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67260.2 | 1.00E-22 | TCP family transcription factor |
| NR | ACE76514.1 | 1.13E-91 | CYC1 [Pisum sativum] |
| Swissprot | tr|Q9FYG7|TCP1_ARATH | 9.00E-29 | Transcription factor TCP1 |
| trEMBL | tr|B4YK04|B4YK04_PEA | 4.00E-92 | CYC1 {ECO:0000313|EMBL:ACE76514.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 91292 | 92544 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TCP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000039s00004191.1 | PF03634.8 | TCP | 120 | 253 | 1.70E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.096 |
| SRR1783600 | control | 0.097 |
| SRR1783602 | moderate drought stress | 0.044 |
| SRR1811619 | moderate drought stress | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.762 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.835 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.195 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.189 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.136 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.142 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.162 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.131 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.117 |
| SRR9715740 | Leave | 0.082 |
| SRR9715741 | Leave | 0.229 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.829 |
| SRR9715743 | Root | 2.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.108 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.293 |
| SRR8400027 | Control-Root | 0.307 |