Gene detail information of Glyur000039s00004195.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13280.1 | 5.00E-62 | allene oxide cyclase 4 |
| NR | NP_001240033.1 | 1.16E-139 | allene oxide cyclase 4, chloroplastic-like [Glycine max] |
| Swissprot | tr|Q93ZC5|AOC4_ARATH | 3.00E-85 | Allene oxide cyclase 4, chloroplastic (Precursor) |
| trEMBL | tr|F6KBT6|F6KBT6_SOYBN | 4.00E-140 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G51600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 131188 | 132270 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10525 | AOC | EC:5.3.99.6 | alpha-Linolenic acid metabolism | map00592 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000039s00004195.1 | PF06351.6 | Allene_ox_cyc | 78 | 254 | 2.90E-100 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.285 |
| SRR1783600 | control | 0.194 |
| SRR1783602 | moderate drought stress | 0.123 |
| SRR1811619 | moderate drought stress | 0.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.149 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.816 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.696 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.069 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 8.501 |
| SRR2868004 | Drought Stress(Tissue:root) | 11.785 |
| SRR2967015 | Control (Tissue:root) | 6.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.903 |
| SRR9715740 | Leave | 0.685 |
| SRR9715741 | Leave | 3.476 |
| SRR9715739 | Root | 0.499 |
| SRR9715742 | Root | 0.815 |
| SRR9715743 | Root | 1.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.344 |
| SRR8749028 | MeJA induced 9h | 0.123 |
| SRR8749029 | MeJA induced 9h | 0.468 |
| SRR8749030 | Uninduced | 0.198 |
| SRR8749031 | Uninduced | 0.202 |
| SRR8749032 | Uninduced | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.397 |
| SRR8400027 | Control-Root | 2.366 |