Gene detail information of Glyur000039s00004219.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G05850.16.00E-120Chitinase family protein
NRXP_004492044.10PREDICTED: chitinase-like protein 2-like [Cicer arietinum]
COGYP_003125181.11.00E-14chitinase [Chitinophaga pinensis DSM 2588]
Swissprottr|Q9MA41|CTL1_ARATH2.00E-152Chitinase-like protein 1 (Precursor)
trEMBLtr|A2Q575|A2Q575_MEDTR0Nodule Cysteine-Rich (NCR) secreted peptide {ECO:0000313|EMBL:AES77898.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00039328675333191-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH19


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006032  chitin catabolic process

GO:0016998  cell wall macromolecule catabolic process


molecular_function

GO:0004568  chitinase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000039s00004219.1PF00182.14Glyco_hydro_191673732.00E-44


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control467.830
SRR1783600control470.640
SRR1783602moderate drought stress316.626
SRR1811619moderate drought stress315.281

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain253.756
DRR006520Root Summer glycyrrhizin high producing strain254.181
DRR006521Root Winter glycyrrhizin high producing strain249.208
DRR006522Root Winter glycyrrhizin high producing strain243.330
DRR006523Root Summer glycyrrhizin low producing strain129.928
DRR006524Root Summer glycyrrhizin low producing strain133.056
DRR006525Leaf Summer glycyrrhizin high producing strain234.146
DRR006526Leaf Summer glycyrrhizin high producing strain232.368

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)389.593
SRR2868004Drought Stress(Tissue:root)275.406
SRR2967015Control (Tissue:root)297.285

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave164.547
SRR9715740Leave88.336
SRR9715741Leave82.215
SRR9715739Root297.816
SRR9715742Root284.867
SRR9715743Root282.275

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h183.201
SRR8749028MeJA induced 9h104.854
SRR8749029MeJA induced 9h152.552
SRR8749030Uninduced50.814
SRR8749031Uninduced39.962
SRR8749032Uninduced45.521

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root353.375
SRR8400027Control-Root443.238

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved