Gene detail information of Glyur000039s00004227.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10840.1 | 4.00E-139 | translation initiation factor 3 subunit H1 |
| NR | XP_004492047.1 | 0 | PREDICTED: eukaryotic translation initiation factor 3 subunit H-like [Cicer arietinum] |
| Swissprot | tr|Q9C5Z2|EIF3H_ARATH | 0 | Eukaryotic translation initiation factor 3 subunit H {ECO:0000255|HAMAP-Rule:MF_03007} |
| trEMBL | tr|V7B160|V7B160_PHAVU | 0 | Eukaryotic translation initiation factor 3 subunit H {ECO:0000256|HAMAP-Rule:MF_03007} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 355982 | 359975 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | JAMM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000039s00004227.1 | PF01398.16 | JAB | 22 | 119 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 43.967 |
| SRR1783600 | control | 44.400 |
| SRR1783602 | moderate drought stress | 53.102 |
| SRR1811619 | moderate drought stress | 52.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 96.680 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 95.330 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 77.486 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 75.350 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 89.600 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 87.800 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.786 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 118.063 |
| SRR2868004 | Drought Stress(Tissue:root) | 98.502 |
| SRR2967015 | Control (Tissue:root) | 107.495 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 65.437 |
| SRR9715740 | Leave | 72.450 |
| SRR9715741 | Leave | 73.253 |
| SRR9715739 | Root | 90.004 |
| SRR9715742 | Root | 75.050 |
| SRR9715743 | Root | 83.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 295.914 |
| SRR8749028 | MeJA induced 9h | 115.266 |
| SRR8749029 | MeJA induced 9h | 145.760 |
| SRR8749030 | Uninduced | 92.780 |
| SRR8749031 | Uninduced | 75.399 |
| SRR8749032 | Uninduced | 110.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 113.449 |
| SRR8400027 | Control-Root | 104.411 |