Gene detail information of Glyur000039s00004231.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55680.19.00E-170Transducin/WD40 repeat-like superfamily protein
NRXP_004492051.10PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like isoform X2 [Cicer arietinum]
COGYP_007103340.11.00E-12WD40 repeat-containing protein [Pseudanabaena sp. PCC 7367]
Swissprottr|Q8H0T9|KTNB1_ARATH1.00E-08Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|V7B078|V7B078_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW11292.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00039370342375242-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000039s00004231.1PF00400.27WD403023408.00E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.419
SRR1783600control24.752
SRR1783602moderate drought stress25.536
SRR1811619moderate drought stress25.395

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain42.472
DRR006520Root Summer glycyrrhizin high producing strain42.151
DRR006521Root Winter glycyrrhizin high producing strain47.766
DRR006522Root Winter glycyrrhizin high producing strain46.885
DRR006523Root Summer glycyrrhizin low producing strain39.388
DRR006524Root Summer glycyrrhizin low producing strain39.351
DRR006525Leaf Summer glycyrrhizin high producing strain70.699
DRR006526Leaf Summer glycyrrhizin high producing strain70.373

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)39.104
SRR2868004Drought Stress(Tissue:root)50.370
SRR2967015Control (Tissue:root)47.157

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave46.594
SRR9715740Leave54.208
SRR9715741Leave47.635
SRR9715739Root25.631
SRR9715742Root35.968
SRR9715743Root30.640

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.772
SRR8749028MeJA induced 9h32.886
SRR8749029MeJA induced 9h23.001
SRR8749030Uninduced26.939
SRR8749031Uninduced19.022
SRR8749032Uninduced14.629

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root52.513
SRR8400027Control-Root51.466

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved