Gene detail

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Gene detail information of Glyur000039s00004232.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48360.2	0	zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides
NR	AES77951.2	0	fanconi-associated nuclease-like protein [Medicago truncatula]
COG	YP_007510432.1	7.00E-12	conserved hypothetical protein [Bradyrhizobium oligotrophicum S58]
Swissprot	tr\|Q5XVJ4\|FAN1_ARATH	0	Fanconi-associated nuclease 1 homolog
trEMBL	tr\|G7KUQ4\|G7KUQ4_MEDTR	0	Fanconi-associated nuclease-like protein {ECO:0000313\|EMBL:AES77951.2}

Sequence

Transcript Sequence

>Glyur000039s00004232.1
ATGGTGAGCGGCAGAGAAAGCTTGATTCGACTGGCTCTGCAACCGCAACTCCAACAACAACCACCACCTCCTACTGAAGCCTACGACAACCCCCAAAACGACGTCGTACTCTGCCCCGTTTGTGGCCGCACGCTTCCCTCCGATAACCGCCACATCAACTCTCATCTCGATTCGTGTCTCTCCCAACCCAAAGGAAGCGAAGAAACACAACGAAAACGAAAACGAAGACTAACCCAACGCACCCTCCTTCAGTTAAACTTCACCCGTCCTCCCAGTAGTAACCACGCCAACAACGACGAGGCACCGCACGTGCGGGATGGCGCGTGTGAAGAACGATCCCCATTCGCTGATAATCACGACAAGGAGGTTGATCTTGATGATGCTGCTGCAATTGCCACTGCCCCATCATCATCATCCTCGCCCTCCGACGATGGGGTGCTGCCGGTGCATGATGATGATGATGAACCCGATAGCATATTTGGAGTGAAGCTTGAAACTTTTATCGTGGGTCGGAGATACACTGACCAGGAGGAGATTTGTCCTGGTGCCACCGTCTCCCTTTTCAGAGACCCACAAAATGTTAAGGATCCCAATGCCATTAAGGTTATTTCTGCAGATTCTGGGTGTTCTAAATTTCTAGGTTATCTCCCACGCGAGCTAGCACAATATCTATCTCCTCTAATTGACAAGTATGGCATTATATTTCAGGGACATGTCACTTCTGTTCCAAAACATTCTCTTGATGCTGTTCCAATTCAGATTATGTGCCACAGAACACCAGATGGCNAAAGCGAGTATGAAGATCAGACTTTTAAATGCTTATGGAAAAATGCTCAGCANGTTGTTGAATTTTCCATCAGGAATCCTTCATCTGTAAAGTATCAGCTGAATTTTTGTCTTATGCTACAAGAGGTGTTAAGAAATAATAATCACCTTCTAACAGAAGATGAAAAAACCTATATGGAGTCATTCACTTCACTCTCAAATGACAGTCAGAGGCTTTTTATTCGGCTATACACTAGAAAAGGACCTTGGTTTCGCATGTCTTGTATATCATATCCTGAAATAATGGATGCTCAAACATCAGTCAAGGAACTTGCTGAGAAAGAATACATATGTTCTGTTGAAGATGGAAATCAACTATGTGAAAGTGACATGAATGATATATTGAATGTGCTCACTGTCTCCGAGCTGCGTGAAATTTGGTGTTTCTTGCTTAAAAAGAGTTGCGGCCGTGGGTTGAAGAAGCAAGATCTAATTTCATCTCTTCTTTCTACATATGCAGGCGTACTATGGCCACACCTATCAACTATGATTTTGGATAGAACTGGTTCCTGTATTAGGATTTCATCAAAAGCTGAATCTCTTTTCTGGCGTACCGAGAGACTTTTCTTCTTAAATGGAGAACAGGATCTCTCATCCTTTCTACTAGTTGATATAGGAAAAATCAAATATCCAACTTACAACTGCATAATATCAGAACCAATTTTCTTAAATCGCAGGAATCTGCTTGCATACGAAGAGGCCATTGAAGTTGCTCAAATTATGGATGAAGCTCTTGATGCAAACAGAACTGATGTGGTATTAAGGTGCATAAAGATTGCTGAATCCTGTGTATCCACTGCTTTTCCCATCCAGAGCTTGACTTCTGAATCAGTATCGACAGTCCTACACTTATTTACAGCATCATGGGTATACTCCAAAGTGCTTACATTAGGGATTTCCTTGCTTGAGCAAGAGCGCAGGTACAGTGATGCAATTGACTTACTCAANTGGCTGCAAAATGTTTTCACCTATGATGTAAGAAGAGGATATTGGACGCTGAGGTTATCAGTTGACTTGGAGCACCTGGGTCGCATTGATGAGAGCCTTCAAGTGGCTGAAAATGGATTGCTGGATCCNTGGGTACGAGCTGGTTCAAGAATGGCACTGCAAAGACGTGTTCTTCGCTTAGGAAAACCACCAAGGCGCTGGAAAGTTCCTAGTTTTTCTAGGTCTGCTCTGCGTAATATCCCTGAGGTTTATGTTCAAGGGAGACCTTTGAATTGTGAATTGGGAGCAAAGAACAGGTTCTACGATGAAGAGGGGGTGCAATGTGGAGTGGAACAGCTTGCTTTGCATTATTATACCGGGGATGGAGGTGGATGGCAAGGTGTTCATACAGAGAGTGGCATATGGTTAACCATTTTTGGGCTTCTTATGTGGGATGTAATATATGCTGATGTGCCTAATGTCTTCTATACTAGATTTCAGAATGCTCCTTTGGATTTGGGCACTGATAACTTCTATNCGGCAAGAAAGAGTATCATAGAATCCCGTTTGCAGCAAATTCGCGATGGCATGGCGGAGGAGTTTCTTATTAAGTCATGGGAAACACATAACGGAACAGCTTGTAGAGGAGTTAATTGGGACCGCCATTCTTTAGATGAGCTTCGCGCTGCTGTAACTTGTGTTGGGGGCTCTTGTTTGGCATCTTTGTGCCAACTTCTTTGTCAAGACTATCGGAGCTGGTCTAGCGGAATGCCTGATTTGCTGCTATGGCGTTTCTGTGGGGAATACAGGGGTGAAGCCAAGCTTGTTGAGGTGAAAGGCCCCAGGGATCGACTCTCCGAACAGCAGCGAGCATGGCTACTGCTGCTTATGGATTGTGGATTTATGATCGAGGTTTGTAAAGTAAAACCTCTGTAGATAGATCAACACAAAATCACTACTTAGCTGCTTAAAATTACAATAGAAGATTACAGCTCTCACAAATATTTCATCATGAGAAGAGTTCACTTTTCAAGCATTACTACTCATGGAAAGAAAAGGAACCGCTCTAAGACCAAAAGGGTACTATTCTAAATTGAAAGTAGGGAGATCTGCTTTAGAAATTTGAGGAAGTCAATGAACTGATGAAGTACTAGAACCCAGATCGAAATATATTGGACTCCCACTTAATCAAATAACTGAAGGGGATCTGTGTATTTGCTTCAGATTCCATCCTCCTGTAACCTGTTATGCNTGGACTTGCAGATTCTGATGCAAATCTTTATGCTACAAGTCTTGCGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00039	377279	385191	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15363	FAN1, MTMR15	EC:3.1.21.- 3.1.4.1	Fanconi anemia pathway	map03460

Gene Ontology

biological_process
GO:0006281 DNA repair

molecular_function GO:0003676 nucleic acid binding GO:0003677 DNA binding GO:0008270 zinc ion binding GO:0016788 hydrolase activity, acting on ester bonds GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000039s00004232.1	PF08797.6	HIRAN	164	256	3.60E-13
Glyur000039s00004232.1	PF08774.6	VRR_NUC	780	893	2.20E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.942
SRR1783600	control	3.883
SRR1783602	moderate drought stress	4.651
SRR1811619	moderate drought stress	4.596

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.855
DRR006520	Root Summer glycyrrhizin high producing strain	3.029
DRR006521	Root Winter glycyrrhizin high producing strain	2.812
DRR006522	Root Winter glycyrrhizin high producing strain	2.952
DRR006523	Root Summer glycyrrhizin low producing strain	2.028
DRR006524	Root Summer glycyrrhizin low producing strain	1.954
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.141

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	4.671
SRR2868004	Drought Stress(Tissue:root)	4.068
SRR2967015	Control (Tissue:root)	4.422

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.462
SRR9715740	Leave	1.851
SRR9715741	Leave	1.427
SRR9715739	Root	0.741
SRR9715742	Root	1.678
SRR9715743	Root	1.926

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.094
SRR8749028	MeJA induced 9h	4.405
SRR8749029	MeJA induced 9h	3.998
SRR8749030	Uninduced	0.907
SRR8749031	Uninduced	0.622
SRR8749032	Uninduced	0.599

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	7.923
SRR8400027	Control-Root	8.121