Gene detail information of Glyur000039s00004234.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27980.1 | 6.00E-17 | dihydrosphingosine phosphate lyase |
| NR | XP_004492058.1 | 5.44E-52 | PREDICTED: sphingosine-1-phosphate lyase-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9C509|SGPL_ARATH | 4.00E-20 | Sphingosine-1-phosphate lyase |
| trEMBL | tr|G7KUR3|G7KUR3_MEDTR | 3.00E-52 | Sphingosine-1-phosphate lyase {ECO:0000313|EMBL:AES77960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00039 | 400825 | 408401 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01634 | SGPL1, DPL1 | EC:4.1.2.27 | Sphingolipid metabolism | map00600 |
| Sphingolipid signaling pathway | map04071 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.023 |
| SRR1783600 | control | 9.152 |
| SRR1783602 | moderate drought stress | 8.629 |
| SRR1811619 | moderate drought stress | 8.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.210 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.679 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 55.607 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 53.978 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.975 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.839 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 45.492 |
| SRR2868004 | Drought Stress(Tissue:root) | 55.716 |
| SRR2967015 | Control (Tissue:root) | 68.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.577 |
| SRR9715740 | Leave | 9.592 |
| SRR9715741 | Leave | 16.985 |
| SRR9715739 | Root | 2.899 |
| SRR9715742 | Root | 12.168 |
| SRR9715743 | Root | 11.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 92.495 |
| SRR8749028 | MeJA induced 9h | 132.202 |
| SRR8749029 | MeJA induced 9h | 161.506 |
| SRR8749030 | Uninduced | 127.666 |
| SRR8749031 | Uninduced | 263.617 |
| SRR8749032 | Uninduced | 222.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.391 |
| SRR8400027 | Control-Root | 23.274 |