Gene detail information of Glyur000040s00007345.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G18030.18.00E-96HAL3-like protein A
NRAET02132.22.41E-144phosphopantothenoylcysteine decarboxylase [Medicago truncatula]
COGYP_007204720.12.00E-42phosphopantothenoylcysteine synthetase/decarboxylase [Singulisphaera acidiphila DSM 18658]
Swissprottr|Q9SWE5|HAL3A_ARATH5.00E-121Phosphopantothenoylcysteine decarboxylase
trEMBLtr|G7LCR5|G7LCR5_MEDTR9.00E-145Phosphopantothenoylcysteine decarboxylase {ECO:0000313|EMBL:AET02132.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00040115999118081-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01598PPCDC, coaC EC:4.1.1.36 Pantothenate and CoA biosynthesis map00770


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000040s00007345.1PF02441.14Flavoprotein251531.80E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.700
SRR1783600control7.628
SRR1783602moderate drought stress11.471
SRR1811619moderate drought stress11.425

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.858
DRR006520Root Summer glycyrrhizin high producing strain12.613
DRR006521Root Winter glycyrrhizin high producing strain28.686
DRR006522Root Winter glycyrrhizin high producing strain28.061
DRR006523Root Summer glycyrrhizin low producing strain17.943
DRR006524Root Summer glycyrrhizin low producing strain17.516
DRR006525Leaf Summer glycyrrhizin high producing strain17.782
DRR006526Leaf Summer glycyrrhizin high producing strain17.324

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.569
SRR2868004Drought Stress(Tissue:root)20.834
SRR2967015Control (Tissue:root)31.052

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.423
SRR9715740Leave16.763
SRR9715741Leave15.683
SRR9715739Root19.177
SRR9715742Root17.465
SRR9715743Root14.925

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.251
SRR8749028MeJA induced 9h10.254
SRR8749029MeJA induced 9h8.818
SRR8749030Uninduced4.876
SRR8749031Uninduced2.627
SRR8749032Uninduced4.415

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.991
SRR8400027Control-Root22.615

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved