Gene detail information of Glyur000040s00007369.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45440.12.00E-138dihydrodipicolinate synthase
NRKEH19033.104-hydroxy-tetrahydrodipicolinate synthase [Medicago truncatula]
COGYP_270348.13.00E-92dihydrodipicolinate synthase [Colwellia psychrerythraea 34H]
Swissprottr|Q42800|DAPA_SOYBN1.00E-1704-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (Precursor)
trEMBLtr|A0A072TQB4|A0A072TQB4_MEDTR04-hydroxy-tetrahydrodipicolinate synthase {ECO:0000313|EMBL:KEH19033.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00040253229259593-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01714dapA EC:4.3.3.7 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300
Monobactam biosynthesismap00261


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016829  lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000040s00007369.1PF00701.17DHDPS643385.60E-89
Glyur000040s00007369.1PF00701.17DHDPS4166901.40E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.364
SRR1783600control18.353
SRR1783602moderate drought stress21.871
SRR1811619moderate drought stress21.502

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.561
DRR006520Root Summer glycyrrhizin high producing strain12.329
DRR006521Root Winter glycyrrhizin high producing strain20.971
DRR006522Root Winter glycyrrhizin high producing strain20.894
DRR006523Root Summer glycyrrhizin low producing strain16.007
DRR006524Root Summer glycyrrhizin low producing strain16.134
DRR006525Leaf Summer glycyrrhizin high producing strain14.537
DRR006526Leaf Summer glycyrrhizin high producing strain14.861

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)57.614
SRR2868004Drought Stress(Tissue:root)60.920
SRR2967015Control (Tissue:root)64.217

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.790
SRR9715740Leave26.178
SRR9715741Leave36.025
SRR9715739Root29.099
SRR9715742Root26.133
SRR9715743Root28.421

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.585
SRR8749028MeJA induced 9h97.756
SRR8749029MeJA induced 9h69.366
SRR8749030Uninduced63.235
SRR8749031Uninduced42.740
SRR8749032Uninduced65.877

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.854
SRR8400027Control-Root25.926

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved