Gene detail information of Glyur000040s00007396.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42280.1 | 3.00E-21 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_003542860.1 | 8.58E-172 | PREDICTED: transcription factor bHLH130 isoform X1 [Glycine max] |
| Swissprot | tr|Q66GR3|BH130_ARATH | 7.00E-35 | Transcription factor bHLH130 |
| trEMBL | tr|K7M0V4|K7M0V4_SOYBN | 2.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G27455.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00040 | 414526 | 418246 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000040s00007396.1 | PF00010.21 | HLH | 345 | 384 | 5.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.338 |
| SRR1783600 | control | 5.237 |
| SRR1783602 | moderate drought stress | 10.191 |
| SRR1811619 | moderate drought stress | 10.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.825 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.665 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.784 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.074 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.165 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.098 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.114 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.098 |
| SRR2967015 | Control (Tissue:root) | 49.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.729 |
| SRR9715740 | Leave | 35.278 |
| SRR9715741 | Leave | 29.530 |
| SRR9715739 | Root | 1.516 |
| SRR9715742 | Root | 5.011 |
| SRR9715743 | Root | 4.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.602 |
| SRR8749028 | MeJA induced 9h | 9.644 |
| SRR8749029 | MeJA induced 9h | 5.639 |
| SRR8749030 | Uninduced | 30.134 |
| SRR8749031 | Uninduced | 24.280 |
| SRR8749032 | Uninduced | 12.652 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.635 |
| SRR8400027 | Control-Root | 8.181 |