Gene detail information of Glyur000041s00007082.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32890.18.00E-56GATA transcription factor 9
NRXP_007135644.10hypothetical protein PHAVU_010G146300g [Phaseolus vulgaris]
Swissprottr|O82632|GATA9_ARATH3.00E-81GATA transcription factor 9
trEMBLtr|V7ASR6|V7ASR6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW07638.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000412741828641-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-GATA


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated

GO:0045893  positive regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0008270  zinc ion binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000041s00007082.1PF00320.22GATA2352692.40E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.956
SRR1783600control0.876
SRR1783602moderate drought stress1.826
SRR1811619moderate drought stress1.723

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.987
DRR006520Root Summer glycyrrhizin high producing strain0.966
DRR006521Root Winter glycyrrhizin high producing strain0.508
DRR006522Root Winter glycyrrhizin high producing strain0.496
DRR006523Root Summer glycyrrhizin low producing strain1.307
DRR006524Root Summer glycyrrhizin low producing strain1.311
DRR006525Leaf Summer glycyrrhizin high producing strain1.272
DRR006526Leaf Summer glycyrrhizin high producing strain1.267

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.924
SRR2868004Drought Stress(Tissue:root)21.848
SRR2967015Control (Tissue:root)27.842

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.453
SRR9715740Leave0.230
SRR9715741Leave0.237
SRR9715739Root2.440
SRR9715742Root1.925
SRR9715743Root2.007

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.379
SRR8749028MeJA induced 9h0.981
SRR8749029MeJA induced 9h0.941
SRR8749030Uninduced1.054
SRR8749031Uninduced0.000
SRR8749032Uninduced0.151

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.498
SRR8400027Control-Root6.879

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved